Hb_115572_040

Information

Type -
Description -
Location Contig115572: 90768-93461
Sequence    

Annotation

kegg
ID cic:CICLE_v10013460mg
description hypothetical protein
nr
ID XP_012070540.1
description PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067E5T2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041945mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115572_040 0.0 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
2 Hb_002536_020 0.1936746866 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
3 Hb_003376_240 0.195532347 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000504_210 0.2057421073 - - hypothetical protein JCGZ_10251 [Jatropha curcas]
5 Hb_028910_010 0.2068870934 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_007749_030 0.2082441931 - - -
7 Hb_008375_020 0.2123403667 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
8 Hb_004432_030 0.2148379551 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_003607_100 0.2351190443 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
10 Hb_151401_010 0.2518756174 - - -
11 Hb_086691_010 0.2582729451 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
12 Hb_000185_020 0.2612017717 - - -
13 Hb_003772_010 0.2616983806 - - polyprotein [Oryza australiensis]
14 Hb_027745_010 0.2620762111 - - 50S ribosomal protein L2, putative [Ricinus communis]
15 Hb_004116_010 0.2639812516 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001981_020 0.2679864932 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
17 Hb_001401_030 0.2681353111 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
18 Hb_009572_010 0.268537013 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
19 Hb_005676_020 0.2732796902 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
20 Hb_000907_050 0.2743468568 - - -

Gene co-expression network

sample Hb_115572_040 Hb_115572_040 Hb_002536_020 Hb_002536_020 Hb_115572_040--Hb_002536_020 Hb_003376_240 Hb_003376_240 Hb_115572_040--Hb_003376_240 Hb_000504_210 Hb_000504_210 Hb_115572_040--Hb_000504_210 Hb_028910_010 Hb_028910_010 Hb_115572_040--Hb_028910_010 Hb_007749_030 Hb_007749_030 Hb_115572_040--Hb_007749_030 Hb_008375_020 Hb_008375_020 Hb_115572_040--Hb_008375_020 Hb_002536_020--Hb_007749_030 Hb_003155_060 Hb_003155_060 Hb_002536_020--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_002536_020--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_002536_020--Hb_108768_010 Hb_003607_100 Hb_003607_100 Hb_002536_020--Hb_003607_100 Hb_009572_010 Hb_009572_010 Hb_003376_240--Hb_009572_010 Hb_000185_020 Hb_000185_020 Hb_003376_240--Hb_000185_020 Hb_003376_240--Hb_000504_210 Hb_007594_020 Hb_007594_020 Hb_003376_240--Hb_007594_020 Hb_086691_010 Hb_086691_010 Hb_003376_240--Hb_086691_010 Hb_000504_210--Hb_000185_020 Hb_000010_230 Hb_000010_230 Hb_000504_210--Hb_000010_230 Hb_002874_250 Hb_002874_250 Hb_000504_210--Hb_002874_250 Hb_003882_030 Hb_003882_030 Hb_000504_210--Hb_003882_030 Hb_004453_120 Hb_004453_120 Hb_000504_210--Hb_004453_120 Hb_157680_010 Hb_157680_010 Hb_000504_210--Hb_157680_010 Hb_028910_010--Hb_008375_020 Hb_004432_030 Hb_004432_030 Hb_028910_010--Hb_004432_030 Hb_028910_010--Hb_003607_100 Hb_028910_010--Hb_003376_240 Hb_028910_010--Hb_002536_020 Hb_007749_030--Hb_003155_060 Hb_007749_030--Hb_000576_100 Hb_007749_030--Hb_108768_010 Hb_003487_010 Hb_003487_010 Hb_007749_030--Hb_003487_010 Hb_007749_030--Hb_003607_100 Hb_008375_020--Hb_003607_100 Hb_008375_020--Hb_004432_030 Hb_076836_010 Hb_076836_010 Hb_008375_020--Hb_076836_010 Hb_001844_010 Hb_001844_010 Hb_008375_020--Hb_001844_010 Hb_002478_050 Hb_002478_050 Hb_008375_020--Hb_002478_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0152517 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0419508 0 0 0.0132258 0.272735

CAGE analysis