Hb_003607_100

Information

Type -
Description -
Location Contig3607: 115756-118430
Sequence    

Annotation

kegg
ID rcu:RCOM_1721490
description zinc finger protein, putative
nr
ID XP_012085159.1
description PREDICTED: zinc finger protein 3 [Jatropha curcas]
swissprot
ID Q39262
description Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1
trembl
ID A0A067JR31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17574 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_100 0.0 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
2 Hb_008375_020 0.065687426 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
3 Hb_028910_010 0.1181692649 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_076836_010 0.1247178272 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
5 Hb_001844_010 0.1251139319 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_002478_050 0.1266473934 - - K(+)/H(+) antiporter, putative [Ricinus communis]
7 Hb_000485_060 0.1275518912 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
8 Hb_005781_010 0.1292163648 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
9 Hb_006094_010 0.1299940975 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_177166_010 0.1315121058 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_003828_010 0.1324138217 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
12 Hb_064445_030 0.1326093182 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_024446_010 0.133454521 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
14 Hb_003504_050 0.1453938022 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
15 Hb_004772_010 0.1535633495 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
16 Hb_011206_030 0.1596448532 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
17 Hb_048953_010 0.1596448532 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
18 Hb_006267_050 0.1650355964 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
19 Hb_001595_060 0.1655477225 - - hypothetical protein L484_001429 [Morus notabilis]
20 Hb_041813_020 0.1682775222 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]

Gene co-expression network

sample Hb_003607_100 Hb_003607_100 Hb_008375_020 Hb_008375_020 Hb_003607_100--Hb_008375_020 Hb_028910_010 Hb_028910_010 Hb_003607_100--Hb_028910_010 Hb_076836_010 Hb_076836_010 Hb_003607_100--Hb_076836_010 Hb_001844_010 Hb_001844_010 Hb_003607_100--Hb_001844_010 Hb_002478_050 Hb_002478_050 Hb_003607_100--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_003607_100--Hb_000485_060 Hb_008375_020--Hb_028910_010 Hb_004432_030 Hb_004432_030 Hb_008375_020--Hb_004432_030 Hb_008375_020--Hb_076836_010 Hb_008375_020--Hb_001844_010 Hb_008375_020--Hb_002478_050 Hb_028910_010--Hb_004432_030 Hb_115572_040 Hb_115572_040 Hb_028910_010--Hb_115572_040 Hb_003376_240 Hb_003376_240 Hb_028910_010--Hb_003376_240 Hb_002536_020 Hb_002536_020 Hb_028910_010--Hb_002536_020 Hb_076836_010--Hb_001844_010 Hb_076836_010--Hb_002478_050 Hb_076836_010--Hb_000485_060 Hb_005781_010 Hb_005781_010 Hb_076836_010--Hb_005781_010 Hb_006094_010 Hb_006094_010 Hb_076836_010--Hb_006094_010 Hb_177166_010 Hb_177166_010 Hb_076836_010--Hb_177166_010 Hb_001844_010--Hb_002478_050 Hb_001844_010--Hb_000485_060 Hb_001844_010--Hb_005781_010 Hb_001844_010--Hb_006094_010 Hb_001844_010--Hb_177166_010 Hb_002478_050--Hb_000485_060 Hb_002478_050--Hb_005781_010 Hb_002478_050--Hb_006094_010 Hb_002478_050--Hb_177166_010 Hb_000485_060--Hb_005781_010 Hb_000485_060--Hb_006094_010 Hb_000485_060--Hb_177166_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0525072 0 0 0 0.16861

CAGE analysis