Hb_155403_010

Information

Type -
Description -
Location Contig155403: 3025-7670
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155403_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_003487_010 0.1752578625 - - -
3 Hb_001386_030 0.2296619962 - - PREDICTED: peroxidase 55 [Jatropha curcas]
4 Hb_001123_020 0.2757632257 - - PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Jatropha curcas]
5 Hb_001195_700 0.278272313 - - -
6 Hb_027751_010 0.278655721 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_003155_060 0.3129080861 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
8 Hb_000576_100 0.3129109699 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_108768_010 0.3129784456 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
10 Hb_024714_040 0.3237741218 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
11 Hb_007749_030 0.3293365399 - - -
12 Hb_006538_180 0.3296406969 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
13 Hb_002536_020 0.336518786 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
14 Hb_000017_130 0.3414117967 - - PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
15 Hb_001623_600 0.3487644103 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
16 Hb_017687_010 0.3523028615 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
17 Hb_001136_050 0.3534071918 - - -
18 Hb_189003_030 0.3628487082 - - -
19 Hb_000613_260 0.3647661952 - - hypothetical protein VITISV_043487 [Vitis vinifera]
20 Hb_004918_010 0.3651660382 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_155403_010 Hb_155403_010 Hb_003487_010 Hb_003487_010 Hb_155403_010--Hb_003487_010 Hb_001386_030 Hb_001386_030 Hb_155403_010--Hb_001386_030 Hb_001123_020 Hb_001123_020 Hb_155403_010--Hb_001123_020 Hb_001195_700 Hb_001195_700 Hb_155403_010--Hb_001195_700 Hb_027751_010 Hb_027751_010 Hb_155403_010--Hb_027751_010 Hb_003155_060 Hb_003155_060 Hb_155403_010--Hb_003155_060 Hb_003487_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_003487_010--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_003487_010--Hb_108768_010 Hb_007749_030 Hb_007749_030 Hb_003487_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_003487_010--Hb_002536_020 Hb_003905_020 Hb_003905_020 Hb_001386_030--Hb_003905_020 Hb_001386_030--Hb_001195_700 Hb_001552_070 Hb_001552_070 Hb_001386_030--Hb_001552_070 Hb_002762_030 Hb_002762_030 Hb_001386_030--Hb_002762_030 Hb_000675_090 Hb_000675_090 Hb_001386_030--Hb_000675_090 Hb_121348_010 Hb_121348_010 Hb_001123_020--Hb_121348_010 Hb_001623_600 Hb_001623_600 Hb_001123_020--Hb_001623_600 Hb_000085_420 Hb_000085_420 Hb_001123_020--Hb_000085_420 Hb_024714_040 Hb_024714_040 Hb_001123_020--Hb_024714_040 Hb_001123_020--Hb_003487_010 Hb_001136_050 Hb_001136_050 Hb_001195_700--Hb_001136_050 Hb_003607_100 Hb_003607_100 Hb_001195_700--Hb_003607_100 Hb_008375_020 Hb_008375_020 Hb_001195_700--Hb_008375_020 Hb_076836_010 Hb_076836_010 Hb_001195_700--Hb_076836_010 Hb_001844_010 Hb_001844_010 Hb_001195_700--Hb_001844_010 Hb_001195_700--Hb_003487_010 Hb_027751_010--Hb_003487_010 Hb_031474_030 Hb_031474_030 Hb_027751_010--Hb_031474_030 Hb_180455_010 Hb_180455_010 Hb_027751_010--Hb_180455_010 Hb_153051_010 Hb_153051_010 Hb_027751_010--Hb_153051_010 Hb_027751_010--Hb_108768_010 Hb_003155_060--Hb_000576_100 Hb_003155_060--Hb_108768_010 Hb_003155_060--Hb_007749_030 Hb_003155_060--Hb_002536_020 Hb_017687_010 Hb_017687_010 Hb_003155_060--Hb_017687_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00701805 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.010479 0 0 0.00326585 0.0176796

CAGE analysis