Hb_000675_090

Information

Type -
Description -
Location Contig675: 210754-212797
Sequence    

Annotation

kegg
ID sbi:SORBI_03g028570
description SORBIDRAFT_03g028570, Sb03g028570; hypothetical protein
nr
ID XP_002455990.1
description hypothetical protein SORBIDRAFT_03g028570 [Sorghum bicolor]
swissprot
ID P11707
description Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2
trembl
ID C5XED9
description Putative uncharacterized protein Sb03g028570 OS=Sorghum bicolor GN=Sb03g028570 PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 cyp72a219-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000675_090 0.0 - - hypothetical protein SORBIDRAFT_03g028570 [Sorghum bicolor]
2 Hb_008566_060 0.1285712525 - - conserved hypothetical protein [Ricinus communis]
3 Hb_185830_050 0.1295001674 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
4 Hb_000083_020 0.1323180138 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_000313_130 0.1338077867 - - zinc finger protein, putative [Ricinus communis]
6 Hb_002893_200 0.134010322 - - aldehyde dehydrogenase, putative [Ricinus communis]
7 Hb_001823_010 0.1347215076 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
8 Hb_001736_010 0.1387536643 - - ring finger protein, putative [Ricinus communis]
9 Hb_006901_010 0.1397645336 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
10 Hb_004837_230 0.1403625541 - - unknown [Populus trichocarpa]
11 Hb_001279_380 0.1411288942 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
12 Hb_000640_090 0.1422227513 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
13 Hb_002014_140 0.1430125389 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_005605_010 0.1447514883 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
15 Hb_000139_010 0.1447955026 - - -
16 Hb_000334_290 0.1460953487 - - monovalent cation:proton antiporter, putative [Ricinus communis]
17 Hb_000482_170 0.1468763794 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
18 Hb_027403_010 0.1470435294 - - P66 protein [Hevea brasiliensis]
19 Hb_097940_010 0.1493202012 - - pollen protein Ole E I-like protein [Medicago truncatula]
20 Hb_000985_150 0.1503669243 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]

Gene co-expression network

sample Hb_000675_090 Hb_000675_090 Hb_008566_060 Hb_008566_060 Hb_000675_090--Hb_008566_060 Hb_185830_050 Hb_185830_050 Hb_000675_090--Hb_185830_050 Hb_000083_020 Hb_000083_020 Hb_000675_090--Hb_000083_020 Hb_000313_130 Hb_000313_130 Hb_000675_090--Hb_000313_130 Hb_002893_200 Hb_002893_200 Hb_000675_090--Hb_002893_200 Hb_001823_010 Hb_001823_010 Hb_000675_090--Hb_001823_010 Hb_008566_060--Hb_185830_050 Hb_001279_380 Hb_001279_380 Hb_008566_060--Hb_001279_380 Hb_000139_010 Hb_000139_010 Hb_008566_060--Hb_000139_010 Hb_027403_010 Hb_027403_010 Hb_008566_060--Hb_027403_010 Hb_008566_060--Hb_002893_200 Hb_097940_010 Hb_097940_010 Hb_008566_060--Hb_097940_010 Hb_185830_050--Hb_001279_380 Hb_185830_050--Hb_027403_010 Hb_185830_050--Hb_000139_010 Hb_000640_090 Hb_000640_090 Hb_185830_050--Hb_000640_090 Hb_185830_050--Hb_002893_200 Hb_005605_010 Hb_005605_010 Hb_000083_020--Hb_005605_010 Hb_000083_020--Hb_001823_010 Hb_006901_010 Hb_006901_010 Hb_000083_020--Hb_006901_010 Hb_000482_170 Hb_000482_170 Hb_000083_020--Hb_000482_170 Hb_005245_110 Hb_005245_110 Hb_000083_020--Hb_005245_110 Hb_002014_140 Hb_002014_140 Hb_000083_020--Hb_002014_140 Hb_001736_010 Hb_001736_010 Hb_000313_130--Hb_001736_010 Hb_007317_040 Hb_007317_040 Hb_000313_130--Hb_007317_040 Hb_000185_110 Hb_000185_110 Hb_000313_130--Hb_000185_110 Hb_000039_140 Hb_000039_140 Hb_000313_130--Hb_000039_140 Hb_029552_010 Hb_029552_010 Hb_000313_130--Hb_029552_010 Hb_019449_010 Hb_019449_010 Hb_000313_130--Hb_019449_010 Hb_002893_200--Hb_002014_140 Hb_002893_200--Hb_001279_380 Hb_002893_200--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_002893_200--Hb_107748_010 Hb_002893_200--Hb_006901_010 Hb_001823_010--Hb_001736_010 Hb_001823_010--Hb_000482_170 Hb_001823_010--Hb_005245_110 Hb_000003_490 Hb_000003_490 Hb_001823_010--Hb_000003_490 Hb_001823_010--Hb_005605_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.29564 0.0182125 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0284952 0 0 0 0.564615

CAGE analysis