Hb_024714_040

Information

Type -
Description -
Location Contig24714: 18888-25975
Sequence    

Annotation

kegg
ID rcu:RCOM_1177300
description DNA mismatch repair protein pms2, putative
nr
ID XP_012082736.1
description PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
swissprot
ID P96082
description DNA mismatch repair protein MutL OS=Thermus aquaticus GN=mutL PE=3 SV=1
trembl
ID A0A067JW62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13913 PE=4 SV=1
Gene Ontology
ID GO:0000003
description dna mismatch repair protein pms1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_040 0.0 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
2 Hb_006538_180 0.257172518 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
3 Hb_006916_180 0.2611331039 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
4 Hb_000613_260 0.2716584324 - - hypothetical protein VITISV_043487 [Vitis vinifera]
5 Hb_001390_020 0.2863893908 - - malate dehydrogenase, putative [Ricinus communis]
6 Hb_138229_010 0.2988048532 - - hypothetical protein JCGZ_05736 [Jatropha curcas]
7 Hb_000987_160 0.299500595 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
8 Hb_002000_120 0.3019738783 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_006449_060 0.304073169 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
10 Hb_000318_400 0.304323231 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010532_010 0.3043599278 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
12 Hb_001534_040 0.3053227906 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
13 Hb_006916_080 0.3055145429 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
14 Hb_002233_050 0.305557278 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
15 Hb_007621_010 0.306171967 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
16 Hb_000023_050 0.3070223872 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
17 Hb_005207_010 0.3080910711 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
18 Hb_166210_010 0.3086234376 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000560_060 0.3110160821 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
20 Hb_000375_250 0.3124312448 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase

Gene co-expression network

sample Hb_024714_040 Hb_024714_040 Hb_006538_180 Hb_006538_180 Hb_024714_040--Hb_006538_180 Hb_006916_180 Hb_006916_180 Hb_024714_040--Hb_006916_180 Hb_000613_260 Hb_000613_260 Hb_024714_040--Hb_000613_260 Hb_001390_020 Hb_001390_020 Hb_024714_040--Hb_001390_020 Hb_138229_010 Hb_138229_010 Hb_024714_040--Hb_138229_010 Hb_000987_160 Hb_000987_160 Hb_024714_040--Hb_000987_160 Hb_009620_060 Hb_009620_060 Hb_006538_180--Hb_009620_060 Hb_001484_080 Hb_001484_080 Hb_006538_180--Hb_001484_080 Hb_000252_180 Hb_000252_180 Hb_006538_180--Hb_000252_180 Hb_000367_140 Hb_000367_140 Hb_006538_180--Hb_000367_140 Hb_000184_030 Hb_000184_030 Hb_006538_180--Hb_000184_030 Hb_000017_130 Hb_000017_130 Hb_006538_180--Hb_000017_130 Hb_002000_120 Hb_002000_120 Hb_006916_180--Hb_002000_120 Hb_023547_020 Hb_023547_020 Hb_006916_180--Hb_023547_020 Hb_005436_030 Hb_005436_030 Hb_006916_180--Hb_005436_030 Hb_001210_100 Hb_001210_100 Hb_006916_180--Hb_001210_100 Hb_003645_050 Hb_003645_050 Hb_006916_180--Hb_003645_050 Hb_001534_040 Hb_001534_040 Hb_006916_180--Hb_001534_040 Hb_000157_110 Hb_000157_110 Hb_000613_260--Hb_000157_110 Hb_000613_260--Hb_001390_020 Hb_000300_310 Hb_000300_310 Hb_000613_260--Hb_000300_310 Hb_002400_150 Hb_002400_150 Hb_000613_260--Hb_002400_150 Hb_012707_020 Hb_012707_020 Hb_000613_260--Hb_012707_020 Hb_031139_010 Hb_031139_010 Hb_001390_020--Hb_031139_010 Hb_000754_050 Hb_000754_050 Hb_001390_020--Hb_000754_050 Hb_014361_110 Hb_014361_110 Hb_001390_020--Hb_014361_110 Hb_002232_380 Hb_002232_380 Hb_001390_020--Hb_002232_380 Hb_003494_030 Hb_003494_030 Hb_001390_020--Hb_003494_030 Hb_003106_170 Hb_003106_170 Hb_001390_020--Hb_003106_170 Hb_000560_060 Hb_000560_060 Hb_138229_010--Hb_000560_060 Hb_004709_030 Hb_004709_030 Hb_138229_010--Hb_004709_030 Hb_005455_010 Hb_005455_010 Hb_138229_010--Hb_005455_010 Hb_001226_100 Hb_001226_100 Hb_138229_010--Hb_001226_100 Hb_002701_170 Hb_002701_170 Hb_138229_010--Hb_002701_170 Hb_001186_120 Hb_001186_120 Hb_138229_010--Hb_001186_120 Hb_006356_010 Hb_006356_010 Hb_000987_160--Hb_006356_010 Hb_003050_010 Hb_003050_010 Hb_000987_160--Hb_003050_010 Hb_000334_160 Hb_000334_160 Hb_000987_160--Hb_000334_160 Hb_000039_190 Hb_000039_190 Hb_000987_160--Hb_000039_190 Hb_001285_020 Hb_001285_020 Hb_000987_160--Hb_001285_020 Hb_089568_010 Hb_089568_010 Hb_000987_160--Hb_089568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00998193 0.0926706 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0274754 0.0216169 0 0.0603137 0.136267

CAGE analysis