Hb_003645_050

Information

Type -
Description -
Location Contig3645: 63452-68155
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003645_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000060_070 0.2023302624 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
3 Hb_006916_180 0.2076015126 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
4 Hb_001355_050 0.2131327199 - - -
5 Hb_008642_050 0.2153051851 - - -
6 Hb_002000_120 0.2182872949 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000094_050 0.2198196088 - - -
8 Hb_058095_030 0.2253736373 - - -
9 Hb_006992_030 0.226344886 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
10 Hb_003302_010 0.2281493095 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
11 Hb_003913_040 0.2282494738 - - ferric reductase oxidase [Manihot esculenta]
12 Hb_180214_010 0.2314364194 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
13 Hb_000028_270 0.2328986708 - - -
14 Hb_003927_020 0.2342410404 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
15 Hb_003169_040 0.235899045 - - -
16 Hb_005765_020 0.2363687556 - - -
17 Hb_000060_130 0.2367181771 - - -
18 Hb_000512_050 0.2392863599 - - hypothetical protein VITISV_005640 [Vitis vinifera]
19 Hb_001009_060 0.2397139727 - - PREDICTED: 4-coumarate--CoA ligase-like 9 [Jatropha curcas]
20 Hb_003540_170 0.240849477 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_003645_050 Hb_003645_050 Hb_000060_070 Hb_000060_070 Hb_003645_050--Hb_000060_070 Hb_006916_180 Hb_006916_180 Hb_003645_050--Hb_006916_180 Hb_001355_050 Hb_001355_050 Hb_003645_050--Hb_001355_050 Hb_008642_050 Hb_008642_050 Hb_003645_050--Hb_008642_050 Hb_002000_120 Hb_002000_120 Hb_003645_050--Hb_002000_120 Hb_000094_050 Hb_000094_050 Hb_003645_050--Hb_000094_050 Hb_162086_010 Hb_162086_010 Hb_000060_070--Hb_162086_010 Hb_007575_010 Hb_007575_010 Hb_000060_070--Hb_007575_010 Hb_000031_200 Hb_000031_200 Hb_000060_070--Hb_000031_200 Hb_144838_010 Hb_144838_010 Hb_000060_070--Hb_144838_010 Hb_008918_030 Hb_008918_030 Hb_000060_070--Hb_008918_030 Hb_006916_180--Hb_002000_120 Hb_023547_020 Hb_023547_020 Hb_006916_180--Hb_023547_020 Hb_005436_030 Hb_005436_030 Hb_006916_180--Hb_005436_030 Hb_001210_100 Hb_001210_100 Hb_006916_180--Hb_001210_100 Hb_001534_040 Hb_001534_040 Hb_006916_180--Hb_001534_040 Hb_005595_030 Hb_005595_030 Hb_001355_050--Hb_005595_030 Hb_003927_020 Hb_003927_020 Hb_001355_050--Hb_003927_020 Hb_006992_030 Hb_006992_030 Hb_001355_050--Hb_006992_030 Hb_150516_010 Hb_150516_010 Hb_001355_050--Hb_150516_010 Hb_001880_020 Hb_001880_020 Hb_001355_050--Hb_001880_020 Hb_043792_030 Hb_043792_030 Hb_001355_050--Hb_043792_030 Hb_045785_010 Hb_045785_010 Hb_008642_050--Hb_045785_010 Hb_004899_210 Hb_004899_210 Hb_008642_050--Hb_004899_210 Hb_058095_030 Hb_058095_030 Hb_008642_050--Hb_058095_030 Hb_094694_010 Hb_094694_010 Hb_008642_050--Hb_094694_010 Hb_039547_010 Hb_039547_010 Hb_008642_050--Hb_039547_010 Hb_000916_010 Hb_000916_010 Hb_008642_050--Hb_000916_010 Hb_002000_120--Hb_000094_050 Hb_010691_010 Hb_010691_010 Hb_002000_120--Hb_010691_010 Hb_002000_120--Hb_001210_100 Hb_002217_290 Hb_002217_290 Hb_002000_120--Hb_002217_290 Hb_093824_010 Hb_093824_010 Hb_000094_050--Hb_093824_010 Hb_000094_050--Hb_006916_180 Hb_000959_050 Hb_000959_050 Hb_000094_050--Hb_000959_050 Hb_000094_050--Hb_010691_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0223138 0.0103837 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00806595 0 0.01597 0.0691879

CAGE analysis