Hb_000060_070

Information

Type -
Description -
Location Contig60: 60116-62581
Sequence    

Annotation

kegg
ID eus:EUTSA_v10023188mg
description hypothetical protein
nr
ID XP_006409622.1
description hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID K7MQN9
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005488
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50543: 59793-59895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000060_070 0.0 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
2 Hb_162086_010 0.1308857973 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
3 Hb_007575_010 0.175059358 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
4 Hb_000031_200 0.188504151 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
5 Hb_003645_050 0.2023302624 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_144838_010 0.2314891916 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
7 Hb_008918_030 0.2407523551 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
8 Hb_001250_030 0.243658994 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012717_030 0.2448399551 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_004511_060 0.2453648318 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
11 Hb_000340_540 0.2460207068 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
12 Hb_012753_070 0.2488165224 - - hypothetical protein VITISV_033646 [Vitis vinifera]
13 Hb_017640_010 0.2493740465 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
14 Hb_000965_010 0.2503076888 - - hypothetical protein VITISV_016917 [Vitis vinifera]
15 Hb_003900_040 0.2523685669 - - hypothetical protein [Lotus japonicus]
16 Hb_003540_170 0.2530147939 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
17 Hb_004899_210 0.2536205862 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
18 Hb_003414_040 0.2542908357 - - hypothetical protein VITISV_016691 [Vitis vinifera]
19 Hb_093912_010 0.2547293545 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_000495_060 0.2561139401 - - Osmotin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000060_070 Hb_000060_070 Hb_162086_010 Hb_162086_010 Hb_000060_070--Hb_162086_010 Hb_007575_010 Hb_007575_010 Hb_000060_070--Hb_007575_010 Hb_000031_200 Hb_000031_200 Hb_000060_070--Hb_000031_200 Hb_003645_050 Hb_003645_050 Hb_000060_070--Hb_003645_050 Hb_144838_010 Hb_144838_010 Hb_000060_070--Hb_144838_010 Hb_008918_030 Hb_008918_030 Hb_000060_070--Hb_008918_030 Hb_004511_060 Hb_004511_060 Hb_162086_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_162086_010--Hb_093912_010 Hb_162086_010--Hb_007575_010 Hb_007970_040 Hb_007970_040 Hb_162086_010--Hb_007970_040 Hb_162086_010--Hb_000031_200 Hb_007575_010--Hb_144838_010 Hb_017640_010 Hb_017640_010 Hb_007575_010--Hb_017640_010 Hb_001250_030 Hb_001250_030 Hb_007575_010--Hb_001250_030 Hb_007575_010--Hb_000031_200 Hb_003169_040 Hb_003169_040 Hb_007575_010--Hb_003169_040 Hb_004445_030 Hb_004445_030 Hb_007575_010--Hb_004445_030 Hb_000031_200--Hb_008918_030 Hb_000879_260 Hb_000879_260 Hb_000031_200--Hb_000879_260 Hb_000031_200--Hb_144838_010 Hb_000373_140 Hb_000373_140 Hb_000031_200--Hb_000373_140 Hb_001508_010 Hb_001508_010 Hb_000031_200--Hb_001508_010 Hb_006916_180 Hb_006916_180 Hb_003645_050--Hb_006916_180 Hb_001355_050 Hb_001355_050 Hb_003645_050--Hb_001355_050 Hb_008642_050 Hb_008642_050 Hb_003645_050--Hb_008642_050 Hb_002000_120 Hb_002000_120 Hb_003645_050--Hb_002000_120 Hb_000094_050 Hb_000094_050 Hb_003645_050--Hb_000094_050 Hb_144838_010--Hb_017640_010 Hb_002598_030 Hb_002598_030 Hb_144838_010--Hb_002598_030 Hb_000672_130 Hb_000672_130 Hb_144838_010--Hb_000672_130 Hb_147604_010 Hb_147604_010 Hb_144838_010--Hb_147604_010 Hb_144838_010--Hb_001250_030 Hb_008918_030--Hb_000879_260 Hb_004375_020 Hb_004375_020 Hb_008918_030--Hb_004375_020 Hb_042463_030 Hb_042463_030 Hb_008918_030--Hb_042463_030 Hb_008918_030--Hb_000373_140 Hb_004987_040 Hb_004987_040 Hb_008918_030--Hb_004987_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0766081 0.00764488 0.00794385 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.055264 0 0.0366559 0.350032

CAGE analysis