Hb_093912_010

Information

Type -
Description -
Location Contig93912: 24-407
Sequence    

Annotation

kegg
ID tcc:TCM_019394
description Kinase superfamily protein, putative
nr
ID XP_012078061.1
description PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EP76
description Kinase superfamily protein, putative OS=Theobroma cacao GN=TCM_019394 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093912_010 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
2 Hb_007970_040 0.0337960228 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
3 Hb_004511_060 0.0473528854 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
4 Hb_113541_010 0.0944587472 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
5 Hb_162086_010 0.1923066414 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
6 Hb_000474_020 0.1930460099 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_003683_100 0.1933016536 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_007924_040 0.1934414202 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
9 Hb_001072_060 0.1943520094 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
10 Hb_035484_010 0.2040547997 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
11 Hb_008918_030 0.2105104773 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
12 Hb_000031_200 0.224168132 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
13 Hb_111854_010 0.2288781226 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
14 Hb_007908_010 0.2309884496 - - -
15 Hb_000340_540 0.2403406479 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
16 Hb_029154_020 0.2453428054 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_029793_020 0.2454176284 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_002223_010 0.2456684188 - - hypothetical protein VITISV_009489 [Vitis vinifera]
19 Hb_004337_010 0.2456774287 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003207_140 0.2474429136 - - PREDICTED: protein HOTHEAD [Jatropha curcas]

Gene co-expression network

sample Hb_093912_010 Hb_093912_010 Hb_007970_040 Hb_007970_040 Hb_093912_010--Hb_007970_040 Hb_004511_060 Hb_004511_060 Hb_093912_010--Hb_004511_060 Hb_113541_010 Hb_113541_010 Hb_093912_010--Hb_113541_010 Hb_162086_010 Hb_162086_010 Hb_093912_010--Hb_162086_010 Hb_000474_020 Hb_000474_020 Hb_093912_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_093912_010--Hb_003683_100 Hb_007970_040--Hb_004511_060 Hb_007970_040--Hb_113541_010 Hb_007970_040--Hb_000474_020 Hb_007970_040--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007970_040--Hb_007924_040 Hb_004511_060--Hb_113541_010 Hb_004511_060--Hb_162086_010 Hb_000976_200 Hb_000976_200 Hb_004511_060--Hb_000976_200 Hb_111854_010 Hb_111854_010 Hb_004511_060--Hb_111854_010 Hb_035484_010 Hb_035484_010 Hb_113541_010--Hb_035484_010 Hb_001072_060 Hb_001072_060 Hb_113541_010--Hb_001072_060 Hb_029154_020 Hb_029154_020 Hb_113541_010--Hb_029154_020 Hb_000060_070 Hb_000060_070 Hb_162086_010--Hb_000060_070 Hb_007575_010 Hb_007575_010 Hb_162086_010--Hb_007575_010 Hb_162086_010--Hb_007970_040 Hb_000031_200 Hb_000031_200 Hb_162086_010--Hb_000031_200 Hb_000474_020--Hb_003683_100 Hb_000474_020--Hb_007924_040 Hb_000474_020--Hb_001072_060 Hb_000474_020--Hb_035484_010 Hb_000474_020--Hb_029154_020 Hb_029793_020 Hb_029793_020 Hb_000474_020--Hb_029793_020 Hb_003683_100--Hb_007924_040 Hb_003683_100--Hb_001072_060 Hb_003683_100--Hb_035484_010 Hb_003683_100--Hb_029154_020 Hb_003683_100--Hb_029793_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.080167 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.169528 0 0 0.881108

CAGE analysis