Hb_162086_010

Information

Type -
Description -
Location Contig162086: 19-2070
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012072702.1
description PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162086_010 0.0 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
2 Hb_000060_070 0.1308857973 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
3 Hb_004511_060 0.1791661662 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
4 Hb_093912_010 0.1923066414 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_007575_010 0.1986611102 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
6 Hb_007970_040 0.2025204765 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
7 Hb_000031_200 0.2215966588 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
8 Hb_008918_030 0.2271850176 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
9 Hb_113541_010 0.2273820473 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
10 Hb_008008_020 0.2391033398 - - -
11 Hb_000976_200 0.2430049465 - - -
12 Hb_099878_040 0.2480899085 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
13 Hb_000340_540 0.2496158561 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
14 Hb_144838_010 0.2513603202 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
15 Hb_111854_010 0.2520679453 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
16 Hb_047923_030 0.253489698 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
17 Hb_000965_010 0.2541681878 - - hypothetical protein VITISV_016917 [Vitis vinifera]
18 Hb_000975_060 0.2552504365 - - -
19 Hb_004445_030 0.2562134644 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000248_020 0.2593818649 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_162086_010 Hb_162086_010 Hb_000060_070 Hb_000060_070 Hb_162086_010--Hb_000060_070 Hb_004511_060 Hb_004511_060 Hb_162086_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_162086_010--Hb_093912_010 Hb_007575_010 Hb_007575_010 Hb_162086_010--Hb_007575_010 Hb_007970_040 Hb_007970_040 Hb_162086_010--Hb_007970_040 Hb_000031_200 Hb_000031_200 Hb_162086_010--Hb_000031_200 Hb_000060_070--Hb_007575_010 Hb_000060_070--Hb_000031_200 Hb_003645_050 Hb_003645_050 Hb_000060_070--Hb_003645_050 Hb_144838_010 Hb_144838_010 Hb_000060_070--Hb_144838_010 Hb_008918_030 Hb_008918_030 Hb_000060_070--Hb_008918_030 Hb_004511_060--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_004511_060--Hb_113541_010 Hb_004511_060--Hb_007970_040 Hb_000976_200 Hb_000976_200 Hb_004511_060--Hb_000976_200 Hb_111854_010 Hb_111854_010 Hb_004511_060--Hb_111854_010 Hb_093912_010--Hb_007970_040 Hb_093912_010--Hb_113541_010 Hb_000474_020 Hb_000474_020 Hb_093912_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_093912_010--Hb_003683_100 Hb_007575_010--Hb_144838_010 Hb_017640_010 Hb_017640_010 Hb_007575_010--Hb_017640_010 Hb_001250_030 Hb_001250_030 Hb_007575_010--Hb_001250_030 Hb_007575_010--Hb_000031_200 Hb_003169_040 Hb_003169_040 Hb_007575_010--Hb_003169_040 Hb_004445_030 Hb_004445_030 Hb_007575_010--Hb_004445_030 Hb_007970_040--Hb_113541_010 Hb_007970_040--Hb_000474_020 Hb_007970_040--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007970_040--Hb_007924_040 Hb_000031_200--Hb_008918_030 Hb_000879_260 Hb_000879_260 Hb_000031_200--Hb_000879_260 Hb_000031_200--Hb_144838_010 Hb_000373_140 Hb_000373_140 Hb_000031_200--Hb_000373_140 Hb_001508_010 Hb_001508_010 Hb_000031_200--Hb_001508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0309726 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0223563 0 0.00891416 0.140773

CAGE analysis