Hb_008918_030

Information

Type -
Description -
Location Contig8918: 73936-75217
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08730g
description POPTRDRAFT_751384; hypothetical protein
nr
ID XP_002299564.2
description hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GKP2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08730g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008918_030 0.0 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
2 Hb_000031_200 0.1105176287 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
3 Hb_000879_260 0.1432004972 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
4 Hb_004375_020 0.1557886942 - - hypothetical protein VITISV_034560 [Vitis vinifera]
5 Hb_042463_030 0.1599490776 - - unknown [Lotus japonicus]
6 Hb_000373_140 0.1603413517 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
7 Hb_004987_040 0.1715759841 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_007575_010 0.1770201576 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
9 Hb_004208_040 0.1776875041 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
10 Hb_002553_030 0.1780719158 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
11 Hb_009355_010 0.1793947102 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]
12 Hb_101462_010 0.1830757581 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
13 Hb_007970_040 0.1891099261 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
14 Hb_144838_010 0.1902359138 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
15 Hb_001508_010 0.1921533189 - - conserved hypothetical protein [Ricinus communis]
16 Hb_025628_010 0.1924314349 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
17 Hb_020154_010 0.1924317586 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000540_180 0.1924651765 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
19 Hb_079902_010 0.1936390906 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
20 Hb_004052_130 0.1938218603 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]

Gene co-expression network

sample Hb_008918_030 Hb_008918_030 Hb_000031_200 Hb_000031_200 Hb_008918_030--Hb_000031_200 Hb_000879_260 Hb_000879_260 Hb_008918_030--Hb_000879_260 Hb_004375_020 Hb_004375_020 Hb_008918_030--Hb_004375_020 Hb_042463_030 Hb_042463_030 Hb_008918_030--Hb_042463_030 Hb_000373_140 Hb_000373_140 Hb_008918_030--Hb_000373_140 Hb_004987_040 Hb_004987_040 Hb_008918_030--Hb_004987_040 Hb_000031_200--Hb_000879_260 Hb_007575_010 Hb_007575_010 Hb_000031_200--Hb_007575_010 Hb_144838_010 Hb_144838_010 Hb_000031_200--Hb_144838_010 Hb_000031_200--Hb_000373_140 Hb_001508_010 Hb_001508_010 Hb_000031_200--Hb_001508_010 Hb_000879_260--Hb_042463_030 Hb_000879_260--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_000879_260--Hb_101462_010 Hb_077242_020 Hb_077242_020 Hb_000879_260--Hb_077242_020 Hb_079902_010 Hb_079902_010 Hb_000879_260--Hb_079902_010 Hb_000879_260--Hb_001508_010 Hb_004375_020--Hb_004987_040 Hb_004375_020--Hb_000373_140 Hb_004208_040 Hb_004208_040 Hb_004375_020--Hb_004208_040 Hb_004375_020--Hb_101462_010 Hb_000123_070 Hb_000123_070 Hb_004375_020--Hb_000123_070 Hb_010053_060 Hb_010053_060 Hb_004375_020--Hb_010053_060 Hb_012163_050 Hb_012163_050 Hb_042463_030--Hb_012163_050 Hb_006040_030 Hb_006040_030 Hb_042463_030--Hb_006040_030 Hb_171685_060 Hb_171685_060 Hb_042463_030--Hb_171685_060 Hb_041813_030 Hb_041813_030 Hb_042463_030--Hb_041813_030 Hb_156746_010 Hb_156746_010 Hb_042463_030--Hb_156746_010 Hb_000373_140--Hb_101462_010 Hb_000373_140--Hb_004208_040 Hb_000373_140--Hb_079902_010 Hb_000373_140--Hb_004987_040 Hb_000373_140--Hb_000123_070 Hb_004987_040--Hb_004208_040 Hb_006040_020 Hb_006040_020 Hb_004987_040--Hb_006040_020 Hb_004987_040--Hb_010053_060 Hb_131816_010 Hb_131816_010 Hb_004987_040--Hb_131816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0562395 0.0178133 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.040512 0 0.016297 0.910791

CAGE analysis