Hb_113541_010

Information

Type -
Description -
Location Contig113541: 725-1680
Sequence    

Annotation

kegg
ID tcc:TCM_019473
description Gag protease polyprotein
nr
ID XP_012436018.1
description PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113541_010 0.0 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
2 Hb_004511_060 0.0777892804 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
3 Hb_093912_010 0.0944587472 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_007970_040 0.1225119351 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
5 Hb_035484_010 0.1860252807 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
6 Hb_001072_060 0.1936862227 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
7 Hb_029154_020 0.1938508229 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_029793_020 0.1938877988 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_002223_010 0.1940121068 - - hypothetical protein VITISV_009489 [Vitis vinifera]
10 Hb_004337_010 0.1940165833 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_003207_140 0.1949077882 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
12 Hb_000676_210 0.1950003749 - - Cytochrome P450 superfamily protein [Theobroma cacao]
13 Hb_007924_040 0.1952943724 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
14 Hb_003683_100 0.1955751817 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_004730_030 0.1959812317 - - synaptonemal complex protein, putative [Ricinus communis]
16 Hb_002431_070 0.1960692952 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
17 Hb_085438_010 0.1960998691 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
18 Hb_000474_020 0.1961181242 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_108331_010 0.1978444756 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_163434_010 0.198761552 - - hypothetical protein JCGZ_13470 [Jatropha curcas]

Gene co-expression network

sample Hb_113541_010 Hb_113541_010 Hb_004511_060 Hb_004511_060 Hb_113541_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_113541_010--Hb_093912_010 Hb_007970_040 Hb_007970_040 Hb_113541_010--Hb_007970_040 Hb_035484_010 Hb_035484_010 Hb_113541_010--Hb_035484_010 Hb_001072_060 Hb_001072_060 Hb_113541_010--Hb_001072_060 Hb_029154_020 Hb_029154_020 Hb_113541_010--Hb_029154_020 Hb_004511_060--Hb_093912_010 Hb_004511_060--Hb_007970_040 Hb_162086_010 Hb_162086_010 Hb_004511_060--Hb_162086_010 Hb_000976_200 Hb_000976_200 Hb_004511_060--Hb_000976_200 Hb_111854_010 Hb_111854_010 Hb_004511_060--Hb_111854_010 Hb_093912_010--Hb_007970_040 Hb_093912_010--Hb_162086_010 Hb_000474_020 Hb_000474_020 Hb_093912_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_093912_010--Hb_003683_100 Hb_007970_040--Hb_000474_020 Hb_007970_040--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007970_040--Hb_007924_040 Hb_035484_010--Hb_001072_060 Hb_035484_010--Hb_007924_040 Hb_035484_010--Hb_003683_100 Hb_035484_010--Hb_000474_020 Hb_035484_010--Hb_029154_020 Hb_029793_020 Hb_029793_020 Hb_035484_010--Hb_029793_020 Hb_001072_060--Hb_007924_040 Hb_001072_060--Hb_003683_100 Hb_001072_060--Hb_000474_020 Hb_001072_060--Hb_029154_020 Hb_001072_060--Hb_029793_020 Hb_029154_020--Hb_029793_020 Hb_002223_010 Hb_002223_010 Hb_029154_020--Hb_002223_010 Hb_004337_010 Hb_004337_010 Hb_029154_020--Hb_004337_010 Hb_003207_140 Hb_003207_140 Hb_029154_020--Hb_003207_140 Hb_000676_210 Hb_000676_210 Hb_029154_020--Hb_000676_210 Hb_004730_030 Hb_004730_030 Hb_029154_020--Hb_004730_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.040255 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.143762 0 0 0.421616

CAGE analysis