Hb_002223_010

Information

Type -
Description -
Location Contig2223: 37547-46370
Sequence    

Annotation

kegg
ID tcc:TCM_028292
description DNA/RNA polymerases superfamily protein
nr
ID CAN61139.1
description hypothetical protein VITISV_009489 [Vitis vinifera]
swissprot
ID Q9UR07
description Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1
trembl
ID A5BA10
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1
Gene Ontology
ID GO:0043231
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002223_010 0.0 - - hypothetical protein VITISV_009489 [Vitis vinifera]
2 Hb_004337_010 1.48015e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_029793_020 0.0004123188 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_029154_020 0.0005354534 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_003207_140 0.0029000983 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
6 Hb_000676_210 0.0031931885 - - Cytochrome P450 superfamily protein [Theobroma cacao]
7 Hb_004730_030 0.0062282714 - - synaptonemal complex protein, putative [Ricinus communis]
8 Hb_002431_070 0.0064948515 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
9 Hb_085438_010 0.0065871861 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
10 Hb_108331_010 0.0116850709 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
11 Hb_163434_010 0.0142440847 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
12 Hb_130470_010 0.0234526037 - - hypothetical protein, partial [Pseudomonas tolaasii]
13 Hb_003226_270 0.0239011637 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
14 Hb_006995_030 0.0478067304 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
15 Hb_035484_010 0.084671343 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_001072_060 0.1204814923 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
17 Hb_007924_040 0.1256290396 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
18 Hb_003683_100 0.1264901621 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000474_020 0.1281269078 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_007108_060 0.1426028239 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_002223_010 Hb_002223_010 Hb_004337_010 Hb_004337_010 Hb_002223_010--Hb_004337_010 Hb_029793_020 Hb_029793_020 Hb_002223_010--Hb_029793_020 Hb_029154_020 Hb_029154_020 Hb_002223_010--Hb_029154_020 Hb_003207_140 Hb_003207_140 Hb_002223_010--Hb_003207_140 Hb_000676_210 Hb_000676_210 Hb_002223_010--Hb_000676_210 Hb_004730_030 Hb_004730_030 Hb_002223_010--Hb_004730_030 Hb_004337_010--Hb_029793_020 Hb_004337_010--Hb_029154_020 Hb_004337_010--Hb_003207_140 Hb_004337_010--Hb_000676_210 Hb_004337_010--Hb_004730_030 Hb_029793_020--Hb_029154_020 Hb_029793_020--Hb_003207_140 Hb_029793_020--Hb_000676_210 Hb_029793_020--Hb_004730_030 Hb_029154_020--Hb_003207_140 Hb_029154_020--Hb_000676_210 Hb_029154_020--Hb_004730_030 Hb_003207_140--Hb_000676_210 Hb_003207_140--Hb_004730_030 Hb_000676_210--Hb_004730_030 Hb_002431_070 Hb_002431_070 Hb_000676_210--Hb_002431_070 Hb_085438_010 Hb_085438_010 Hb_000676_210--Hb_085438_010 Hb_004730_030--Hb_002431_070 Hb_004730_030--Hb_085438_010 Hb_108331_010 Hb_108331_010 Hb_004730_030--Hb_108331_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0113869 0 0 0.0242962

CAGE analysis