Hb_007970_040

Information

Type -
Description -
Location Contig7970: 4743-7190
Sequence    

Annotation

kegg
ID gmx:102668600
description uncharacterized LOC102668600
nr
ID XP_010243669.1
description PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID Q6L3N8
description Putative gag-pol polyprotein, identical OS=Solanum demissum GN=SDM1_42t00010 PE=4 SV=1
Gene Ontology
ID GO:0016020
description uncharacterized mitochondrial protein g00810-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007970_040 0.0 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
2 Hb_093912_010 0.0337960228 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_004511_060 0.0802111054 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
4 Hb_113541_010 0.1225119351 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
5 Hb_000474_020 0.1839408824 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_003683_100 0.1844574971 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_007924_040 0.1847343228 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
8 Hb_001072_060 0.1864602371 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
9 Hb_008918_030 0.1891099261 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
10 Hb_035484_010 0.2015410939 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
11 Hb_162086_010 0.2025204765 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
12 Hb_000031_200 0.2099784906 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
13 Hb_007908_010 0.2216621566 - - -
14 Hb_026988_030 0.2299582422 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
15 Hb_001244_030 0.2348770879 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_012753_070 0.2424904568 - - hypothetical protein VITISV_033646 [Vitis vinifera]
17 Hb_111854_010 0.2439332844 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_029154_020 0.2524397996 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_029793_020 0.2525254652 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_002223_010 0.2528124998 - - hypothetical protein VITISV_009489 [Vitis vinifera]

Gene co-expression network

sample Hb_007970_040 Hb_007970_040 Hb_093912_010 Hb_093912_010 Hb_007970_040--Hb_093912_010 Hb_004511_060 Hb_004511_060 Hb_007970_040--Hb_004511_060 Hb_113541_010 Hb_113541_010 Hb_007970_040--Hb_113541_010 Hb_000474_020 Hb_000474_020 Hb_007970_040--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_007970_040--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007970_040--Hb_007924_040 Hb_093912_010--Hb_004511_060 Hb_093912_010--Hb_113541_010 Hb_162086_010 Hb_162086_010 Hb_093912_010--Hb_162086_010 Hb_093912_010--Hb_000474_020 Hb_093912_010--Hb_003683_100 Hb_004511_060--Hb_113541_010 Hb_004511_060--Hb_162086_010 Hb_000976_200 Hb_000976_200 Hb_004511_060--Hb_000976_200 Hb_111854_010 Hb_111854_010 Hb_004511_060--Hb_111854_010 Hb_035484_010 Hb_035484_010 Hb_113541_010--Hb_035484_010 Hb_001072_060 Hb_001072_060 Hb_113541_010--Hb_001072_060 Hb_029154_020 Hb_029154_020 Hb_113541_010--Hb_029154_020 Hb_000474_020--Hb_003683_100 Hb_000474_020--Hb_007924_040 Hb_000474_020--Hb_001072_060 Hb_000474_020--Hb_035484_010 Hb_000474_020--Hb_029154_020 Hb_029793_020 Hb_029793_020 Hb_000474_020--Hb_029793_020 Hb_003683_100--Hb_007924_040 Hb_003683_100--Hb_001072_060 Hb_003683_100--Hb_035484_010 Hb_003683_100--Hb_029154_020 Hb_003683_100--Hb_029793_020 Hb_007924_040--Hb_001072_060 Hb_007924_040--Hb_035484_010 Hb_007924_040--Hb_029154_020 Hb_007924_040--Hb_029793_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0110429 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0239084 0 0 0.1502

CAGE analysis