Hb_111854_010

Information

Type -
Description -
Location Contig111854: 12-1023
Sequence    

Annotation

kegg
ID tcc:TCM_009243
description hypothetical protein
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061E4P4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_009243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111854_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_008008_020 0.1775079959 - - -
3 Hb_004511_060 0.2108211952 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
4 Hb_093912_010 0.2288781226 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_113541_010 0.2357824857 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
6 Hb_000976_200 0.2427329334 - - -
7 Hb_007970_040 0.2439332844 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
8 Hb_162086_010 0.2520679453 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
9 Hb_012286_080 0.25704655 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
10 Hb_000340_540 0.2729818171 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
11 Hb_175748_010 0.2743785082 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_098068_010 0.2748922921 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
13 Hb_002874_140 0.2884185469 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
14 Hb_065395_020 0.2986800646 - - receptor-kinase, putative [Ricinus communis]
15 Hb_000060_070 0.3006179625 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
16 Hb_002996_020 0.3014407551 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_003605_010 0.3029116231 - - -
18 Hb_002374_130 0.3064971494 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
19 Hb_002870_050 0.3130948998 - - -
20 Hb_004235_020 0.3217669188 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]

Gene co-expression network

sample Hb_111854_010 Hb_111854_010 Hb_008008_020 Hb_008008_020 Hb_111854_010--Hb_008008_020 Hb_004511_060 Hb_004511_060 Hb_111854_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_111854_010--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_111854_010--Hb_113541_010 Hb_000976_200 Hb_000976_200 Hb_111854_010--Hb_000976_200 Hb_007970_040 Hb_007970_040 Hb_111854_010--Hb_007970_040 Hb_012286_080 Hb_012286_080 Hb_008008_020--Hb_012286_080 Hb_162086_010 Hb_162086_010 Hb_008008_020--Hb_162086_010 Hb_166631_010 Hb_166631_010 Hb_008008_020--Hb_166631_010 Hb_000060_070 Hb_000060_070 Hb_008008_020--Hb_000060_070 Hb_187024_090 Hb_187024_090 Hb_008008_020--Hb_187024_090 Hb_004511_060--Hb_093912_010 Hb_004511_060--Hb_113541_010 Hb_004511_060--Hb_007970_040 Hb_004511_060--Hb_162086_010 Hb_004511_060--Hb_000976_200 Hb_093912_010--Hb_007970_040 Hb_093912_010--Hb_113541_010 Hb_093912_010--Hb_162086_010 Hb_000474_020 Hb_000474_020 Hb_093912_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_093912_010--Hb_003683_100 Hb_113541_010--Hb_007970_040 Hb_035484_010 Hb_035484_010 Hb_113541_010--Hb_035484_010 Hb_001072_060 Hb_001072_060 Hb_113541_010--Hb_001072_060 Hb_029154_020 Hb_029154_020 Hb_113541_010--Hb_029154_020 Hb_000976_200--Hb_113541_010 Hb_000340_540 Hb_000340_540 Hb_000976_200--Hb_000340_540 Hb_000976_200--Hb_162086_010 Hb_003927_060 Hb_003927_060 Hb_000976_200--Hb_003927_060 Hb_007970_040--Hb_000474_020 Hb_007970_040--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007970_040--Hb_007924_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0389789 0 0 0 0.0205904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0421101 0 0 0.171734

CAGE analysis