Hb_000340_540

Information

Type -
Description -
Location Contig340: 458376-459675
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03980g
description POPTRDRAFT_661343; hypothetical protein
nr
ID XP_012092347.1
description PREDICTED: peroxidase 39-like [Jatropha curcas]
swissprot
ID O23044
description Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1
trembl
ID A0A067JFI0
description Peroxidase OS=Jatropha curcas GN=JCGZ_22014 PE=3 SV=1
Gene Ontology
ID GO:0004601
description peroxidase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_540 0.0 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
2 Hb_004511_060 0.2188047412 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
3 Hb_000976_200 0.2304361075 - - -
4 Hb_093912_010 0.2403406479 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_000060_070 0.2460207068 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
6 Hb_113541_010 0.2477205791 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
7 Hb_162086_010 0.2496158561 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
8 Hb_007970_040 0.256574254 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
9 Hb_111854_010 0.2729818171 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
10 Hb_000031_200 0.2774791781 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
11 Hb_000138_180 0.2883170113 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
12 Hb_006827_010 0.2917969497 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
13 Hb_001267_020 0.2967382591 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
14 Hb_112255_010 0.2984092294 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_167136_010 0.2993528019 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_002990_020 0.2996775886 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
17 Hb_006616_070 0.3026678855 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
18 Hb_004643_020 0.3045207849 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
19 Hb_002471_280 0.3097315715 - - PREDICTED: cyclin-SDS [Jatropha curcas]
20 Hb_002874_140 0.3099445922 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]

Gene co-expression network

sample Hb_000340_540 Hb_000340_540 Hb_004511_060 Hb_004511_060 Hb_000340_540--Hb_004511_060 Hb_000976_200 Hb_000976_200 Hb_000340_540--Hb_000976_200 Hb_093912_010 Hb_093912_010 Hb_000340_540--Hb_093912_010 Hb_000060_070 Hb_000060_070 Hb_000340_540--Hb_000060_070 Hb_113541_010 Hb_113541_010 Hb_000340_540--Hb_113541_010 Hb_162086_010 Hb_162086_010 Hb_000340_540--Hb_162086_010 Hb_004511_060--Hb_093912_010 Hb_004511_060--Hb_113541_010 Hb_007970_040 Hb_007970_040 Hb_004511_060--Hb_007970_040 Hb_004511_060--Hb_162086_010 Hb_004511_060--Hb_000976_200 Hb_111854_010 Hb_111854_010 Hb_004511_060--Hb_111854_010 Hb_000976_200--Hb_113541_010 Hb_000976_200--Hb_111854_010 Hb_000976_200--Hb_162086_010 Hb_003927_060 Hb_003927_060 Hb_000976_200--Hb_003927_060 Hb_093912_010--Hb_007970_040 Hb_093912_010--Hb_113541_010 Hb_093912_010--Hb_162086_010 Hb_000474_020 Hb_000474_020 Hb_093912_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_093912_010--Hb_003683_100 Hb_000060_070--Hb_162086_010 Hb_007575_010 Hb_007575_010 Hb_000060_070--Hb_007575_010 Hb_000031_200 Hb_000031_200 Hb_000060_070--Hb_000031_200 Hb_003645_050 Hb_003645_050 Hb_000060_070--Hb_003645_050 Hb_144838_010 Hb_144838_010 Hb_000060_070--Hb_144838_010 Hb_008918_030 Hb_008918_030 Hb_000060_070--Hb_008918_030 Hb_113541_010--Hb_007970_040 Hb_035484_010 Hb_035484_010 Hb_113541_010--Hb_035484_010 Hb_001072_060 Hb_001072_060 Hb_113541_010--Hb_001072_060 Hb_029154_020 Hb_029154_020 Hb_113541_010--Hb_029154_020 Hb_162086_010--Hb_007575_010 Hb_162086_010--Hb_007970_040 Hb_162086_010--Hb_000031_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0460037 0 0.0199 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0412956 0 0 0.16861

CAGE analysis