Hb_000976_200

Information

Type -
Description -
Location Contig976: 187804-196446
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_200 0.0 - - -
2 Hb_004511_060 0.2054141777 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
3 Hb_113541_010 0.2150191488 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
4 Hb_000340_540 0.2304361075 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
5 Hb_111854_010 0.2427329334 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
6 Hb_162086_010 0.2430049465 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
7 Hb_003927_060 0.2501172332 - - hypothetical protein JCGZ_05636 [Jatropha curcas]
8 Hb_093912_010 0.2511997472 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_005183_180 0.2764486941 - - alpha amylase family protein [Populus trichocarpa]
10 Hb_007970_040 0.2820127686 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
11 Hb_000060_070 0.2944221598 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
12 Hb_095449_010 0.3058720739 - - PREDICTED: low-temperature-induced 65 kDa protein-like [Jatropha curcas]
13 Hb_007064_030 0.3091257484 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_008008_020 0.314404357 - - -
15 Hb_004656_080 0.3199219478 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000731_120 0.322723987 - - Beta-glucosidase, putative [Ricinus communis]
17 Hb_000965_010 0.3313821293 - - hypothetical protein VITISV_016917 [Vitis vinifera]
18 Hb_187024_090 0.3319291143 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_022793_010 0.3422000308 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
20 Hb_003605_010 0.347314385 - - -

Gene co-expression network

sample Hb_000976_200 Hb_000976_200 Hb_004511_060 Hb_004511_060 Hb_000976_200--Hb_004511_060 Hb_113541_010 Hb_113541_010 Hb_000976_200--Hb_113541_010 Hb_000340_540 Hb_000340_540 Hb_000976_200--Hb_000340_540 Hb_111854_010 Hb_111854_010 Hb_000976_200--Hb_111854_010 Hb_162086_010 Hb_162086_010 Hb_000976_200--Hb_162086_010 Hb_003927_060 Hb_003927_060 Hb_000976_200--Hb_003927_060 Hb_093912_010 Hb_093912_010 Hb_004511_060--Hb_093912_010 Hb_004511_060--Hb_113541_010 Hb_007970_040 Hb_007970_040 Hb_004511_060--Hb_007970_040 Hb_004511_060--Hb_162086_010 Hb_004511_060--Hb_111854_010 Hb_113541_010--Hb_093912_010 Hb_113541_010--Hb_007970_040 Hb_035484_010 Hb_035484_010 Hb_113541_010--Hb_035484_010 Hb_001072_060 Hb_001072_060 Hb_113541_010--Hb_001072_060 Hb_029154_020 Hb_029154_020 Hb_113541_010--Hb_029154_020 Hb_000340_540--Hb_004511_060 Hb_000340_540--Hb_093912_010 Hb_000060_070 Hb_000060_070 Hb_000340_540--Hb_000060_070 Hb_000340_540--Hb_113541_010 Hb_000340_540--Hb_162086_010 Hb_008008_020 Hb_008008_020 Hb_111854_010--Hb_008008_020 Hb_111854_010--Hb_093912_010 Hb_111854_010--Hb_113541_010 Hb_111854_010--Hb_007970_040 Hb_162086_010--Hb_000060_070 Hb_162086_010--Hb_093912_010 Hb_007575_010 Hb_007575_010 Hb_162086_010--Hb_007575_010 Hb_162086_010--Hb_007970_040 Hb_000031_200 Hb_000031_200 Hb_162086_010--Hb_000031_200 Hb_003605_010 Hb_003605_010 Hb_003927_060--Hb_003605_010 Hb_007064_030 Hb_007064_030 Hb_003927_060--Hb_007064_030 Hb_083663_010 Hb_083663_010 Hb_003927_060--Hb_083663_010 Hb_095449_010 Hb_095449_010 Hb_003927_060--Hb_095449_010 Hb_126044_010 Hb_126044_010 Hb_003927_060--Hb_126044_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0445055 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0480488 0 0 0.097144

CAGE analysis