Hb_003605_010

Information

Type -
Description -
Location Contig3605: 717-1577
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_010 0.0 - - -
2 Hb_003927_060 0.2404716261 - - hypothetical protein JCGZ_05636 [Jatropha curcas]
3 Hb_173121_010 0.2816969538 - - -
4 Hb_019617_010 0.2904078241 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_067730_010 0.2934754941 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
6 Hb_002996_020 0.2960989831 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_111854_010 0.3029116231 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_155720_010 0.3142413256 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
9 Hb_008008_020 0.3311490374 - - -
10 Hb_006212_030 0.3314478011 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_000018_050 0.3340834511 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
12 Hb_002235_290 0.3375072747 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
13 Hb_080085_010 0.3397163813 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000976_200 0.347314385 - - -
15 Hb_007064_030 0.3511282256 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_002520_010 0.3516859775 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
17 Hb_002874_140 0.3531094503 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
18 Hb_012286_080 0.3667063073 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
19 Hb_040290_010 0.3733200074 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_032634_010 0.3824779744 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_003605_010 Hb_003605_010 Hb_003927_060 Hb_003927_060 Hb_003605_010--Hb_003927_060 Hb_173121_010 Hb_173121_010 Hb_003605_010--Hb_173121_010 Hb_019617_010 Hb_019617_010 Hb_003605_010--Hb_019617_010 Hb_067730_010 Hb_067730_010 Hb_003605_010--Hb_067730_010 Hb_002996_020 Hb_002996_020 Hb_003605_010--Hb_002996_020 Hb_111854_010 Hb_111854_010 Hb_003605_010--Hb_111854_010 Hb_000976_200 Hb_000976_200 Hb_003927_060--Hb_000976_200 Hb_007064_030 Hb_007064_030 Hb_003927_060--Hb_007064_030 Hb_083663_010 Hb_083663_010 Hb_003927_060--Hb_083663_010 Hb_095449_010 Hb_095449_010 Hb_003927_060--Hb_095449_010 Hb_126044_010 Hb_126044_010 Hb_003927_060--Hb_126044_010 Hb_032634_010 Hb_032634_010 Hb_173121_010--Hb_032634_010 Hb_002235_290 Hb_002235_290 Hb_173121_010--Hb_002235_290 Hb_173121_010--Hb_019617_010 Hb_173121_010--Hb_067730_010 Hb_155720_010 Hb_155720_010 Hb_173121_010--Hb_155720_010 Hb_019617_010--Hb_155720_010 Hb_019617_010--Hb_032634_010 Hb_005822_030 Hb_005822_030 Hb_019617_010--Hb_005822_030 Hb_000018_050 Hb_000018_050 Hb_019617_010--Hb_000018_050 Hb_001221_360 Hb_001221_360 Hb_067730_010--Hb_001221_360 Hb_009710_030 Hb_009710_030 Hb_067730_010--Hb_009710_030 Hb_011139_050 Hb_011139_050 Hb_067730_010--Hb_011139_050 Hb_002085_100 Hb_002085_100 Hb_067730_010--Hb_002085_100 Hb_006940_020 Hb_006940_020 Hb_067730_010--Hb_006940_020 Hb_002996_020--Hb_111854_010 Hb_004981_010 Hb_004981_010 Hb_002996_020--Hb_004981_010 Hb_008008_020 Hb_008008_020 Hb_002996_020--Hb_008008_020 Hb_003717_020 Hb_003717_020 Hb_002996_020--Hb_003717_020 Hb_002874_140 Hb_002874_140 Hb_002996_020--Hb_002874_140 Hb_111854_010--Hb_008008_020 Hb_004511_060 Hb_004511_060 Hb_111854_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_111854_010--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_111854_010--Hb_113541_010 Hb_111854_010--Hb_000976_200 Hb_007970_040 Hb_007970_040 Hb_111854_010--Hb_007970_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.098284 0.174556 0 0 0 0.0902543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.183761 0 0 0.313571

CAGE analysis