Hb_002996_020

Information

Type -
Description -
Location Contig2996: 38087-42749
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002996_020 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_003605_010 0.2960989831 - - -
3 Hb_111854_010 0.3014407551 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
4 Hb_004981_010 0.3046964613 - - -
5 Hb_008008_020 0.3091996786 - - -
6 Hb_003717_020 0.3102345699 - - -
7 Hb_002874_140 0.3260349575 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
8 Hb_012286_080 0.335069291 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
9 Hb_000045_060 0.3368626044 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_006040_040 0.3535974905 - - Putative mitochondrial protein [Glycine soja]
11 Hb_001021_050 0.3540139109 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_181402_010 0.3564921221 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
13 Hb_001758_030 0.3605618925 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
14 Hb_000016_120 0.3609764443 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
15 Hb_187951_010 0.3654137054 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_002235_290 0.3677741541 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
17 Hb_095449_010 0.3701085955 - - PREDICTED: low-temperature-induced 65 kDa protein-like [Jatropha curcas]
18 Hb_118014_010 0.3730148026 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
19 Hb_000976_200 0.3767097025 - - -
20 Hb_065395_020 0.3902523563 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002996_020 Hb_002996_020 Hb_003605_010 Hb_003605_010 Hb_002996_020--Hb_003605_010 Hb_111854_010 Hb_111854_010 Hb_002996_020--Hb_111854_010 Hb_004981_010 Hb_004981_010 Hb_002996_020--Hb_004981_010 Hb_008008_020 Hb_008008_020 Hb_002996_020--Hb_008008_020 Hb_003717_020 Hb_003717_020 Hb_002996_020--Hb_003717_020 Hb_002874_140 Hb_002874_140 Hb_002996_020--Hb_002874_140 Hb_003927_060 Hb_003927_060 Hb_003605_010--Hb_003927_060 Hb_173121_010 Hb_173121_010 Hb_003605_010--Hb_173121_010 Hb_019617_010 Hb_019617_010 Hb_003605_010--Hb_019617_010 Hb_067730_010 Hb_067730_010 Hb_003605_010--Hb_067730_010 Hb_003605_010--Hb_111854_010 Hb_111854_010--Hb_008008_020 Hb_004511_060 Hb_004511_060 Hb_111854_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_111854_010--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_111854_010--Hb_113541_010 Hb_000976_200 Hb_000976_200 Hb_111854_010--Hb_000976_200 Hb_007970_040 Hb_007970_040 Hb_111854_010--Hb_007970_040 Hb_004981_010--Hb_003717_020 Hb_065395_020 Hb_065395_020 Hb_004981_010--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_004981_010--Hb_001021_050 Hb_001758_030 Hb_001758_030 Hb_004981_010--Hb_001758_030 Hb_181402_010 Hb_181402_010 Hb_004981_010--Hb_181402_010 Hb_000045_060 Hb_000045_060 Hb_004981_010--Hb_000045_060 Hb_012286_080 Hb_012286_080 Hb_008008_020--Hb_012286_080 Hb_162086_010 Hb_162086_010 Hb_008008_020--Hb_162086_010 Hb_166631_010 Hb_166631_010 Hb_008008_020--Hb_166631_010 Hb_000060_070 Hb_000060_070 Hb_008008_020--Hb_000060_070 Hb_187024_090 Hb_187024_090 Hb_008008_020--Hb_187024_090 Hb_003717_020--Hb_181402_010 Hb_003717_020--Hb_065395_020 Hb_003717_020--Hb_001021_050 Hb_003717_020--Hb_000045_060 Hb_111985_030 Hb_111985_030 Hb_003717_020--Hb_111985_030 Hb_008191_010 Hb_008191_010 Hb_002874_140--Hb_008191_010 Hb_002874_140--Hb_111854_010 Hb_000340_540 Hb_000340_540 Hb_002874_140--Hb_000340_540 Hb_002874_140--Hb_187024_090 Hb_002874_140--Hb_008008_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0182674 0 0 0 0.0122867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00824665 0 0 0.0176796

CAGE analysis