Hb_166631_010

Information

Type -
Description -
Location Contig166631: 30-644
Sequence    

Annotation

kegg
ID tcc:TCM_044877
description DNA/RNA polymerases superfamily protein, putative
nr
ID XP_012487865.1
description PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
swissprot
ID P10401
description Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q7XYU4
description Integrase (Fragment) OS=Gossypium herbaceum PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166631_010 0.0 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
2 Hb_008008_020 0.2439325644 - - -
3 Hb_000148_010 0.2519580299 - - -
4 Hb_000495_060 0.2561161388 - - Osmotin precursor, putative [Ricinus communis]
5 Hb_012286_080 0.2656909888 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
6 Hb_000965_010 0.2778490292 - - hypothetical protein VITISV_016917 [Vitis vinifera]
7 Hb_006274_020 0.3018815746 - - structural constituent of cell wall, putative [Ricinus communis]
8 Hb_074670_010 0.3068942 - - hypothetical protein VITISV_015625 [Vitis vinifera]
9 Hb_001496_140 0.3117790951 - - -
10 Hb_001799_220 0.3151343917 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
11 Hb_002800_020 0.3162895958 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_002090_010 0.3177468627 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
13 Hb_030370_010 0.3201410784 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
14 Hb_131872_010 0.3214259952 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_002123_030 0.3235895117 - - hypothetical protein VITISV_003767 [Vitis vinifera]
16 Hb_000685_090 0.3239985809 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
17 Hb_187024_090 0.3245576908 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_001596_010 0.3252592696 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
19 Hb_012538_010 0.3266348825 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_062671_010 0.3271997055 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_166631_010 Hb_166631_010 Hb_008008_020 Hb_008008_020 Hb_166631_010--Hb_008008_020 Hb_000148_010 Hb_000148_010 Hb_166631_010--Hb_000148_010 Hb_000495_060 Hb_000495_060 Hb_166631_010--Hb_000495_060 Hb_012286_080 Hb_012286_080 Hb_166631_010--Hb_012286_080 Hb_000965_010 Hb_000965_010 Hb_166631_010--Hb_000965_010 Hb_006274_020 Hb_006274_020 Hb_166631_010--Hb_006274_020 Hb_008008_020--Hb_012286_080 Hb_111854_010 Hb_111854_010 Hb_008008_020--Hb_111854_010 Hb_162086_010 Hb_162086_010 Hb_008008_020--Hb_162086_010 Hb_000060_070 Hb_000060_070 Hb_008008_020--Hb_000060_070 Hb_187024_090 Hb_187024_090 Hb_008008_020--Hb_187024_090 Hb_033095_050 Hb_033095_050 Hb_000148_010--Hb_033095_050 Hb_005542_170 Hb_005542_170 Hb_000148_010--Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_000148_010--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_000148_010--Hb_002249_200 Hb_002800_020 Hb_002800_020 Hb_000148_010--Hb_002800_020 Hb_005031_010 Hb_005031_010 Hb_000148_010--Hb_005031_010 Hb_000495_060--Hb_000965_010 Hb_014967_010 Hb_014967_010 Hb_000495_060--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_000495_060--Hb_159404_010 Hb_020400_010 Hb_020400_010 Hb_000495_060--Hb_020400_010 Hb_008755_020 Hb_008755_020 Hb_000495_060--Hb_008755_020 Hb_110782_010 Hb_110782_010 Hb_000495_060--Hb_110782_010 Hb_012286_080--Hb_111854_010 Hb_187951_010 Hb_187951_010 Hb_012286_080--Hb_187951_010 Hb_012286_080--Hb_000148_010 Hb_143398_020 Hb_143398_020 Hb_012286_080--Hb_143398_020 Hb_000685_090 Hb_000685_090 Hb_000965_010--Hb_000685_090 Hb_022793_010 Hb_022793_010 Hb_000965_010--Hb_022793_010 Hb_001596_010 Hb_001596_010 Hb_000965_010--Hb_001596_010 Hb_000965_010--Hb_187024_090 Hb_000965_010--Hb_000060_070 Hb_002733_050 Hb_002733_050 Hb_006274_020--Hb_002733_050 Hb_019641_020 Hb_019641_020 Hb_006274_020--Hb_019641_020 Hb_006274_020--Hb_020400_010 Hb_012538_010 Hb_012538_010 Hb_006274_020--Hb_012538_010 Hb_114121_010 Hb_114121_010 Hb_006274_020--Hb_114121_010 Hb_006013_030 Hb_006013_030 Hb_006274_020--Hb_006013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0428867 0 0 0 0.0747364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0765157 0 0.156669 0.297303

CAGE analysis