Hb_005031_010

Information

Type -
Description -
Location Contig5031: 17552-21392
Sequence    

Annotation

kegg
ID tcc:TCM_045650
description DNA/RNA polymerases superfamily protein
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A5B9P6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019123 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005031_010 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_101624_010 6.15271e-05 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_005542_170 0.0826387613 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_033095_050 0.1070136613 - - hypothetical protein VITISV_038692 [Vitis vinifera]
5 Hb_025528_010 0.1189371675 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
6 Hb_002400_430 0.1281282875 - - -
7 Hb_002249_200 0.1297010759 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
8 Hb_002800_020 0.179285325 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001596_010 0.1803869496 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
10 Hb_001244_030 0.2053604032 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_028527_010 0.2170189456 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_000148_010 0.2286825082 - - -
13 Hb_029793_020 0.2418409274 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_029154_020 0.2418409809 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_002223_010 0.2418411776 - - hypothetical protein VITISV_009489 [Vitis vinifera]
16 Hb_004337_010 0.2418411989 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003207_140 0.2418616164 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
18 Hb_000676_210 0.2418655015 - - Cytochrome P450 superfamily protein [Theobroma cacao]
19 Hb_004730_030 0.2419253618 - - synaptonemal complex protein, putative [Ricinus communis]
20 Hb_002431_070 0.2419323293 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]

Gene co-expression network

sample Hb_005031_010 Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_005031_010--Hb_101624_010 Hb_005542_170 Hb_005542_170 Hb_005031_010--Hb_005542_170 Hb_033095_050 Hb_033095_050 Hb_005031_010--Hb_033095_050 Hb_025528_010 Hb_025528_010 Hb_005031_010--Hb_025528_010 Hb_002400_430 Hb_002400_430 Hb_005031_010--Hb_002400_430 Hb_002249_200 Hb_002249_200 Hb_005031_010--Hb_002249_200 Hb_101624_010--Hb_005542_170 Hb_101624_010--Hb_033095_050 Hb_101624_010--Hb_025528_010 Hb_101624_010--Hb_002400_430 Hb_101624_010--Hb_002249_200 Hb_005542_170--Hb_025528_010 Hb_005542_170--Hb_002249_200 Hb_005542_170--Hb_033095_050 Hb_001244_030 Hb_001244_030 Hb_005542_170--Hb_001244_030 Hb_002800_020 Hb_002800_020 Hb_033095_050--Hb_002800_020 Hb_033095_050--Hb_025528_010 Hb_033095_050--Hb_002249_200 Hb_025528_010--Hb_002249_200 Hb_025528_010--Hb_001244_030 Hb_028527_010 Hb_028527_010 Hb_025528_010--Hb_028527_010 Hb_007108_060 Hb_007108_060 Hb_002400_430--Hb_007108_060 Hb_006995_030 Hb_006995_030 Hb_002400_430--Hb_006995_030 Hb_002400_430--Hb_005542_170 Hb_003226_270 Hb_003226_270 Hb_002400_430--Hb_003226_270 Hb_002249_200--Hb_001244_030 Hb_002249_200--Hb_028527_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0101718 0 0.00403197 0.0217433

CAGE analysis