Hb_028527_010

Information

Type -
Description -
Location Contig28527: 8978-12755
Sequence    

Annotation

kegg
ID cic:CICLE_v10033628mg
description hypothetical protein
nr
ID XP_006436321.1
description hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V4TII4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033628mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028527_010 0.0 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
2 Hb_001244_030 0.0602818338 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002249_200 0.0999820782 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
4 Hb_025528_010 0.107875814 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
5 Hb_005542_170 0.1408956444 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_033095_050 0.1491475601 - - hypothetical protein VITISV_038692 [Vitis vinifera]
7 Hb_007083_040 0.1576209404 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
8 Hb_000668_210 0.192179802 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
9 Hb_002800_020 0.2110310008 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_005031_010 0.2170189456 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_101624_010 0.2170731466 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_000474_020 0.2234212128 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_003683_100 0.2241038227 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_007924_040 0.2244665389 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
15 Hb_001072_060 0.2266853891 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
16 Hb_001307_230 0.2269346542 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
17 Hb_001172_110 0.2269356134 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
18 Hb_002375_100 0.2269411081 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
19 Hb_026317_020 0.2269419918 - - hypothetical protein VITISV_035911 [Vitis vinifera]
20 Hb_001782_090 0.2269605725 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]

Gene co-expression network

sample Hb_028527_010 Hb_028527_010 Hb_001244_030 Hb_001244_030 Hb_028527_010--Hb_001244_030 Hb_002249_200 Hb_002249_200 Hb_028527_010--Hb_002249_200 Hb_025528_010 Hb_025528_010 Hb_028527_010--Hb_025528_010 Hb_005542_170 Hb_005542_170 Hb_028527_010--Hb_005542_170 Hb_033095_050 Hb_033095_050 Hb_028527_010--Hb_033095_050 Hb_007083_040 Hb_007083_040 Hb_028527_010--Hb_007083_040 Hb_001244_030--Hb_002249_200 Hb_001244_030--Hb_025528_010 Hb_001244_030--Hb_005542_170 Hb_001244_030--Hb_033095_050 Hb_000474_020 Hb_000474_020 Hb_001244_030--Hb_000474_020 Hb_002249_200--Hb_025528_010 Hb_002249_200--Hb_005542_170 Hb_002249_200--Hb_033095_050 Hb_005031_010 Hb_005031_010 Hb_002249_200--Hb_005031_010 Hb_025528_010--Hb_005542_170 Hb_025528_010--Hb_033095_050 Hb_025528_010--Hb_005031_010 Hb_005542_170--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_005542_170--Hb_101624_010 Hb_005542_170--Hb_033095_050 Hb_002800_020 Hb_002800_020 Hb_033095_050--Hb_002800_020 Hb_033095_050--Hb_005031_010 Hb_033095_050--Hb_101624_010 Hb_007083_040--Hb_001244_030 Hb_007083_040--Hb_002249_200 Hb_007083_040--Hb_033095_050 Hb_007083_040--Hb_025528_010 Hb_007083_040--Hb_005542_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0322996 0 0.0258826 0.267232

CAGE analysis