Hb_025528_010

Information

Type -
Description -
Location Contig25528: 82-4320
Sequence    

Annotation

kegg
ID sot:102596706
description uncharacterized LOC102596706
nr
ID XP_006360681.1
description PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID M1B3G9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402013972 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025528_010 0.0 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
2 Hb_002249_200 0.0110261002 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
3 Hb_005542_170 0.0365464695 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001244_030 0.0876186848 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_033095_050 0.1003858154 - - hypothetical protein VITISV_038692 [Vitis vinifera]
6 Hb_028527_010 0.107875814 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
7 Hb_005031_010 0.1189371675 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
8 Hb_101624_010 0.1189972122 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_000668_210 0.1871159166 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
10 Hb_002800_020 0.1930387692 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001072_060 0.1984387684 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
12 Hb_007924_040 0.1987012135 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
13 Hb_003683_100 0.1987578607 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000474_020 0.1988755916 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_035484_010 0.2002035032 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_002400_430 0.2039350658 - - -
17 Hb_007083_040 0.2060187049 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
18 Hb_000148_010 0.2123049563 - - -
19 Hb_029154_020 0.2266679586 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_029793_020 0.2267259686 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_025528_010 Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_025528_010--Hb_002249_200 Hb_005542_170 Hb_005542_170 Hb_025528_010--Hb_005542_170 Hb_001244_030 Hb_001244_030 Hb_025528_010--Hb_001244_030 Hb_033095_050 Hb_033095_050 Hb_025528_010--Hb_033095_050 Hb_028527_010 Hb_028527_010 Hb_025528_010--Hb_028527_010 Hb_005031_010 Hb_005031_010 Hb_025528_010--Hb_005031_010 Hb_002249_200--Hb_005542_170 Hb_002249_200--Hb_001244_030 Hb_002249_200--Hb_028527_010 Hb_002249_200--Hb_033095_050 Hb_002249_200--Hb_005031_010 Hb_005542_170--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_005542_170--Hb_101624_010 Hb_005542_170--Hb_033095_050 Hb_005542_170--Hb_001244_030 Hb_001244_030--Hb_028527_010 Hb_001244_030--Hb_033095_050 Hb_000474_020 Hb_000474_020 Hb_001244_030--Hb_000474_020 Hb_002800_020 Hb_002800_020 Hb_033095_050--Hb_002800_020 Hb_033095_050--Hb_005031_010 Hb_033095_050--Hb_101624_010 Hb_028527_010--Hb_005542_170 Hb_028527_010--Hb_033095_050 Hb_007083_040 Hb_007083_040 Hb_028527_010--Hb_007083_040 Hb_005031_010--Hb_101624_010 Hb_002400_430 Hb_002400_430 Hb_005031_010--Hb_002400_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0686461 0 0.0280004 0.269632

CAGE analysis