Hb_002400_430

Information

Type -
Description -
Location Contig2400: 310025-311600
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_430 0.0 - - -
2 Hb_101624_010 0.1281162054 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_005031_010 0.1281282875 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_007108_060 0.1732675129 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_006995_030 0.1735377244 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
6 Hb_005542_170 0.1747479673 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_003226_270 0.1813910361 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
8 Hb_130470_010 0.1815642098 - - hypothetical protein, partial [Pseudomonas tolaasii]
9 Hb_003938_040 0.1849237464 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
10 Hb_163434_010 0.1853148493 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
11 Hb_000749_100 0.1857925607 - - -
12 Hb_108331_010 0.1864215061 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
13 Hb_085438_010 0.1887062253 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_002431_070 0.1887485718 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
15 Hb_004730_030 0.1888710208 - - synaptonemal complex protein, putative [Ricinus communis]
16 Hb_000676_210 0.1902848638 - - Cytochrome P450 superfamily protein [Theobroma cacao]
17 Hb_003207_140 0.190423298 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
18 Hb_004337_010 0.1918037051 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_002223_010 0.1918108683 - - hypothetical protein VITISV_009489 [Vitis vinifera]
20 Hb_029793_020 0.1920107422 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_002400_430 Hb_002400_430 Hb_101624_010 Hb_101624_010 Hb_002400_430--Hb_101624_010 Hb_005031_010 Hb_005031_010 Hb_002400_430--Hb_005031_010 Hb_007108_060 Hb_007108_060 Hb_002400_430--Hb_007108_060 Hb_006995_030 Hb_006995_030 Hb_002400_430--Hb_006995_030 Hb_005542_170 Hb_005542_170 Hb_002400_430--Hb_005542_170 Hb_003226_270 Hb_003226_270 Hb_002400_430--Hb_003226_270 Hb_101624_010--Hb_005031_010 Hb_101624_010--Hb_005542_170 Hb_033095_050 Hb_033095_050 Hb_101624_010--Hb_033095_050 Hb_025528_010 Hb_025528_010 Hb_101624_010--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_101624_010--Hb_002249_200 Hb_005031_010--Hb_005542_170 Hb_005031_010--Hb_033095_050 Hb_005031_010--Hb_025528_010 Hb_005031_010--Hb_002249_200 Hb_003938_040 Hb_003938_040 Hb_007108_060--Hb_003938_040 Hb_100451_010 Hb_100451_010 Hb_007108_060--Hb_100451_010 Hb_007108_060--Hb_006995_030 Hb_027472_200 Hb_027472_200 Hb_007108_060--Hb_027472_200 Hb_007108_060--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_007108_060--Hb_130470_010 Hb_006995_030--Hb_003226_270 Hb_006995_030--Hb_130470_010 Hb_163434_010 Hb_163434_010 Hb_006995_030--Hb_163434_010 Hb_108331_010 Hb_108331_010 Hb_006995_030--Hb_108331_010 Hb_085438_010 Hb_085438_010 Hb_006995_030--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_006995_030--Hb_002431_070 Hb_005542_170--Hb_025528_010 Hb_005542_170--Hb_002249_200 Hb_005542_170--Hb_033095_050 Hb_001244_030 Hb_001244_030 Hb_005542_170--Hb_001244_030 Hb_003226_270--Hb_130470_010 Hb_003226_270--Hb_163434_010 Hb_003226_270--Hb_108331_010 Hb_003226_270--Hb_085438_010 Hb_003226_270--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_003226_270--Hb_004730_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.162698 0 0.0219639 0.217369

CAGE analysis