Hb_130470_010

Information

Type -
Description -
Location Contig130470: 33-569
Sequence    

Annotation

kegg
ID vvi:104877802
description uncharacterized LOC104877802
nr
ID WP_042918478.1
description hypothetical protein, partial [Pseudomonas tolaasii]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130470_010 0.0 - - hypothetical protein, partial [Pseudomonas tolaasii]
2 Hb_003226_270 0.0004486681 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
3 Hb_163434_010 0.009209853 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
4 Hb_108331_010 0.0117689348 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
5 Hb_085438_010 0.0168665562 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
6 Hb_002431_070 0.0169588811 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
7 Hb_004730_030 0.0172254322 - - synaptonemal complex protein, putative [Ricinus communis]
8 Hb_000676_210 0.0202600805 - - Cytochrome P450 superfamily protein [Theobroma cacao]
9 Hb_003207_140 0.0205531186 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
10 Hb_004337_010 0.0234378058 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002223_010 0.0234526037 - - hypothetical protein VITISV_009489 [Vitis vinifera]
12 Hb_029793_020 0.0238648208 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_029154_020 0.0239879245 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_006995_030 0.0243655944 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
15 Hb_035484_010 0.1080202688 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_007108_060 0.1193050325 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_001072_060 0.1437290199 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
18 Hb_007924_040 0.1488587342 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
19 Hb_003683_100 0.1497167893 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000474_020 0.1513476377 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_130470_010 Hb_130470_010 Hb_003226_270 Hb_003226_270 Hb_130470_010--Hb_003226_270 Hb_163434_010 Hb_163434_010 Hb_130470_010--Hb_163434_010 Hb_108331_010 Hb_108331_010 Hb_130470_010--Hb_108331_010 Hb_085438_010 Hb_085438_010 Hb_130470_010--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_130470_010--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_130470_010--Hb_004730_030 Hb_003226_270--Hb_163434_010 Hb_003226_270--Hb_108331_010 Hb_003226_270--Hb_085438_010 Hb_003226_270--Hb_002431_070 Hb_003226_270--Hb_004730_030 Hb_163434_010--Hb_108331_010 Hb_163434_010--Hb_085438_010 Hb_163434_010--Hb_002431_070 Hb_163434_010--Hb_004730_030 Hb_108331_010--Hb_085438_010 Hb_108331_010--Hb_002431_070 Hb_108331_010--Hb_004730_030 Hb_000676_210 Hb_000676_210 Hb_108331_010--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_108331_010--Hb_003207_140 Hb_085438_010--Hb_002431_070 Hb_085438_010--Hb_004730_030 Hb_085438_010--Hb_000676_210 Hb_085438_010--Hb_003207_140 Hb_004337_010 Hb_004337_010 Hb_085438_010--Hb_004337_010 Hb_002431_070--Hb_004730_030 Hb_002431_070--Hb_000676_210 Hb_002431_070--Hb_003207_140 Hb_002431_070--Hb_004337_010 Hb_004730_030--Hb_000676_210 Hb_004730_030--Hb_003207_140 Hb_004730_030--Hb_004337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0940172 0 0 0.178402

CAGE analysis