Hb_006995_030

Information

Type -
Description -
Location Contig6995: 66230-67553
Sequence    

Annotation

kegg
ID gmx:102663993
description uncharacterized LOC102663993
nr
ID XP_006578342.1
description PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
swissprot
ID -
description -
trembl
ID M4EW33
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra033016 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54709: 57049-87941
cDNA
(Sanger)
(ID:Location)		 002_B19.ab1: 57049-87803 , 028_J22.ab1: 57148-87832 , 052_I12.ab1: 57124-87802

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006995_030 0.0 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
2 Hb_003226_270 0.0239170337 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
3 Hb_130470_010 0.0243655944 - - hypothetical protein, partial [Pseudomonas tolaasii]
4 Hb_163434_010 0.033572326 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
5 Hb_108331_010 0.0361302266 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
6 Hb_085438_010 0.0412250819 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
7 Hb_002431_070 0.0413173516 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
8 Hb_004730_030 0.0415837423 - - synaptonemal complex protein, putative [Ricinus communis]
9 Hb_000676_210 0.0446164567 - - Cytochrome P450 superfamily protein [Theobroma cacao]
10 Hb_003207_140 0.0449092975 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
11 Hb_004337_010 0.0477919435 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_002223_010 0.0478067304 - - hypothetical protein VITISV_009489 [Vitis vinifera]
13 Hb_029793_020 0.048218641 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_029154_020 0.0483416523 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_007108_060 0.0950432395 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_003938_040 0.1285738231 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
17 Hb_035484_010 0.1322266815 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
18 Hb_001072_060 0.1678147345 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
19 Hb_007924_040 0.1729238397 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
20 Hb_100451_010 0.1730461184 - - -

Gene co-expression network

sample Hb_006995_030 Hb_006995_030 Hb_003226_270 Hb_003226_270 Hb_006995_030--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_006995_030--Hb_130470_010 Hb_163434_010 Hb_163434_010 Hb_006995_030--Hb_163434_010 Hb_108331_010 Hb_108331_010 Hb_006995_030--Hb_108331_010 Hb_085438_010 Hb_085438_010 Hb_006995_030--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_006995_030--Hb_002431_070 Hb_003226_270--Hb_130470_010 Hb_003226_270--Hb_163434_010 Hb_003226_270--Hb_108331_010 Hb_003226_270--Hb_085438_010 Hb_003226_270--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_003226_270--Hb_004730_030 Hb_130470_010--Hb_163434_010 Hb_130470_010--Hb_108331_010 Hb_130470_010--Hb_085438_010 Hb_130470_010--Hb_002431_070 Hb_130470_010--Hb_004730_030 Hb_163434_010--Hb_108331_010 Hb_163434_010--Hb_085438_010 Hb_163434_010--Hb_002431_070 Hb_163434_010--Hb_004730_030 Hb_108331_010--Hb_085438_010 Hb_108331_010--Hb_002431_070 Hb_108331_010--Hb_004730_030 Hb_000676_210 Hb_000676_210 Hb_108331_010--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_108331_010--Hb_003207_140 Hb_085438_010--Hb_002431_070 Hb_085438_010--Hb_004730_030 Hb_085438_010--Hb_000676_210 Hb_085438_010--Hb_003207_140 Hb_004337_010 Hb_004337_010 Hb_085438_010--Hb_004337_010 Hb_002431_070--Hb_004730_030 Hb_002431_070--Hb_000676_210 Hb_002431_070--Hb_003207_140 Hb_002431_070--Hb_004337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.196911 0 0 0.331512

CAGE analysis