Hb_007108_060

Information

Type -
Description -
Location Contig7108: 60185-63983
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007108_060 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_003938_040 0.0336751488 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
3 Hb_100451_010 0.0784521932 - - -
4 Hb_006995_030 0.0950432395 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
5 Hb_027472_200 0.1114165821 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_003226_270 0.118858792 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
7 Hb_130470_010 0.1193050325 - - hypothetical protein, partial [Pseudomonas tolaasii]
8 Hb_163434_010 0.1284606712 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
9 Hb_108331_010 0.1310031914 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
10 Hb_085438_010 0.136065857 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
11 Hb_002431_070 0.1361575245 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
12 Hb_004730_030 0.1364221728 - - synaptonemal complex protein, putative [Ricinus communis]
13 Hb_000676_210 0.1394346473 - - Cytochrome P450 superfamily protein [Theobroma cacao]
14 Hb_003207_140 0.1397254944 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
15 Hb_004337_010 0.1425881413 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_002223_010 0.1426028239 - - hypothetical protein VITISV_009489 [Vitis vinifera]
17 Hb_029793_020 0.1430118209 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_029154_020 0.1431339594 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_002400_430 0.1732675129 - - -
20 Hb_035484_010 0.2261139395 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007108_060 Hb_007108_060 Hb_003938_040 Hb_003938_040 Hb_007108_060--Hb_003938_040 Hb_100451_010 Hb_100451_010 Hb_007108_060--Hb_100451_010 Hb_006995_030 Hb_006995_030 Hb_007108_060--Hb_006995_030 Hb_027472_200 Hb_027472_200 Hb_007108_060--Hb_027472_200 Hb_003226_270 Hb_003226_270 Hb_007108_060--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_007108_060--Hb_130470_010 Hb_003938_040--Hb_100451_010 Hb_003938_040--Hb_027472_200 Hb_003938_040--Hb_006995_030 Hb_003938_040--Hb_003226_270 Hb_003938_040--Hb_130470_010 Hb_100451_010--Hb_027472_200 Hb_100451_010--Hb_006995_030 Hb_100451_010--Hb_003226_270 Hb_100451_010--Hb_130470_010 Hb_006995_030--Hb_003226_270 Hb_006995_030--Hb_130470_010 Hb_163434_010 Hb_163434_010 Hb_006995_030--Hb_163434_010 Hb_108331_010 Hb_108331_010 Hb_006995_030--Hb_108331_010 Hb_085438_010 Hb_085438_010 Hb_006995_030--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_006995_030--Hb_002431_070 Hb_027472_200--Hb_006995_030 Hb_005183_180 Hb_005183_180 Hb_027472_200--Hb_005183_180 Hb_002400_430 Hb_002400_430 Hb_027472_200--Hb_002400_430 Hb_003226_270--Hb_130470_010 Hb_003226_270--Hb_163434_010 Hb_003226_270--Hb_108331_010 Hb_003226_270--Hb_085438_010 Hb_003226_270--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_003226_270--Hb_004730_030 Hb_130470_010--Hb_163434_010 Hb_130470_010--Hb_108331_010 Hb_130470_010--Hb_085438_010 Hb_130470_010--Hb_002431_070 Hb_130470_010--Hb_004730_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0197052 0 0 0.0210712

CAGE analysis