Hb_027472_200

Information

Type -
Description -
Location Contig27472: 135965-136633
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_200 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_100451_010 0.0330672856 - - -
3 Hb_003938_040 0.077843991 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
4 Hb_007108_060 0.1114165821 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_006995_030 0.2057037668 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
6 Hb_005183_180 0.2101874026 - - alpha amylase family protein [Populus trichocarpa]
7 Hb_002400_430 0.2284589017 - - -
8 Hb_003226_270 0.2292192638 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
9 Hb_130470_010 0.2296594418 - - hypothetical protein, partial [Pseudomonas tolaasii]
10 Hb_163434_010 0.2386870616 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
11 Hb_108331_010 0.2411927945 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
12 Hb_000788_140 0.2458373991 - - conserved hypothetical protein [Ricinus communis]
13 Hb_085438_010 0.2461805942 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_002431_070 0.2462708862 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
15 Hb_004730_030 0.2465315596 - - synaptonemal complex protein, putative [Ricinus communis]
16 Hb_000749_100 0.2490560467 - - -
17 Hb_000676_210 0.249498369 - - Cytochrome P450 superfamily protein [Theobroma cacao]
18 Hb_003207_140 0.2497847665 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
19 Hb_004337_010 0.2526032344 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002223_010 0.2526176886 - - hypothetical protein VITISV_009489 [Vitis vinifera]

Gene co-expression network

sample Hb_027472_200 Hb_027472_200 Hb_100451_010 Hb_100451_010 Hb_027472_200--Hb_100451_010 Hb_003938_040 Hb_003938_040 Hb_027472_200--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_027472_200--Hb_007108_060 Hb_006995_030 Hb_006995_030 Hb_027472_200--Hb_006995_030 Hb_005183_180 Hb_005183_180 Hb_027472_200--Hb_005183_180 Hb_002400_430 Hb_002400_430 Hb_027472_200--Hb_002400_430 Hb_100451_010--Hb_003938_040 Hb_100451_010--Hb_007108_060 Hb_100451_010--Hb_006995_030 Hb_003226_270 Hb_003226_270 Hb_100451_010--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_100451_010--Hb_130470_010 Hb_003938_040--Hb_007108_060 Hb_003938_040--Hb_006995_030 Hb_003938_040--Hb_003226_270 Hb_003938_040--Hb_130470_010 Hb_007108_060--Hb_006995_030 Hb_007108_060--Hb_003226_270 Hb_007108_060--Hb_130470_010 Hb_006995_030--Hb_003226_270 Hb_006995_030--Hb_130470_010 Hb_163434_010 Hb_163434_010 Hb_006995_030--Hb_163434_010 Hb_108331_010 Hb_108331_010 Hb_006995_030--Hb_108331_010 Hb_085438_010 Hb_085438_010 Hb_006995_030--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_006995_030--Hb_002431_070 Hb_005183_180--Hb_100451_010 Hb_005183_180--Hb_003938_040 Hb_005183_180--Hb_007108_060 Hb_000251_140 Hb_000251_140 Hb_005183_180--Hb_000251_140 Hb_000976_200 Hb_000976_200 Hb_005183_180--Hb_000976_200 Hb_101624_010 Hb_101624_010 Hb_002400_430--Hb_101624_010 Hb_005031_010 Hb_005031_010 Hb_002400_430--Hb_005031_010 Hb_002400_430--Hb_007108_060 Hb_002400_430--Hb_006995_030 Hb_005542_170 Hb_005542_170 Hb_002400_430--Hb_005542_170 Hb_002400_430--Hb_003226_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.292328 0 0 0.18407

CAGE analysis