Hb_000251_140

Information

Type -
Description -
Location Contig251: 175685-176484
Sequence    

Annotation

kegg
ID rcu:RCOM_1098990
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_002532127.1
description leucine-rich repeat containing protein, putative [Ricinus communis]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID B9T1K8
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_1098990 PE=4 SV=1
Gene Ontology
ID GO:0005488
description disease resistance protein rga2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_140 0.0 - - leucine-rich repeat containing protein, putative [Ricinus communis]
2 Hb_005183_180 0.2366676307 - - alpha amylase family protein [Populus trichocarpa]
3 Hb_002805_010 0.2598614091 - - -
4 Hb_027472_200 0.2809059057 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_000419_110 0.2842835298 - - hypothetical protein JCGZ_20036 [Jatropha curcas]
6 Hb_000749_100 0.2909468681 - - -
7 Hb_100451_010 0.3021620272 - - -
8 Hb_003938_040 0.3334366984 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
9 Hb_026687_030 0.3349134329 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
10 Hb_000622_070 0.3354845814 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002391_330 0.3355618493 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000572_040 0.3364011886 - - hypothetical protein POPTR_0006s14815g [Populus trichocarpa]
13 Hb_147793_010 0.3376623209 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
14 Hb_003732_040 0.3381651774 - - putative esterase family protein [Populus trichocarpa]
15 Hb_000002_200 0.3570339125 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
16 Hb_007108_060 0.3583302024 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_001627_030 0.3603730173 - - hypothetical protein JCGZ_11752 [Jatropha curcas]
18 Hb_011628_020 0.3604235975 - - conserved hypothetical protein [Ricinus communis]
19 Hb_034661_020 0.3622957622 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
20 Hb_000002_170 0.3623900012 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]

Gene co-expression network

sample Hb_000251_140 Hb_000251_140 Hb_005183_180 Hb_005183_180 Hb_000251_140--Hb_005183_180 Hb_002805_010 Hb_002805_010 Hb_000251_140--Hb_002805_010 Hb_027472_200 Hb_027472_200 Hb_000251_140--Hb_027472_200 Hb_000419_110 Hb_000419_110 Hb_000251_140--Hb_000419_110 Hb_000749_100 Hb_000749_100 Hb_000251_140--Hb_000749_100 Hb_100451_010 Hb_100451_010 Hb_000251_140--Hb_100451_010 Hb_005183_180--Hb_027472_200 Hb_005183_180--Hb_100451_010 Hb_003938_040 Hb_003938_040 Hb_005183_180--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_005183_180--Hb_007108_060 Hb_000976_200 Hb_000976_200 Hb_005183_180--Hb_000976_200 Hb_000622_070 Hb_000622_070 Hb_002805_010--Hb_000622_070 Hb_000016_070 Hb_000016_070 Hb_002805_010--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_002805_010--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_002805_010--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_002805_010--Hb_000029_230 Hb_000032_170 Hb_000032_170 Hb_002805_010--Hb_000032_170 Hb_027472_200--Hb_100451_010 Hb_027472_200--Hb_003938_040 Hb_027472_200--Hb_007108_060 Hb_006995_030 Hb_006995_030 Hb_027472_200--Hb_006995_030 Hb_002400_430 Hb_002400_430 Hb_027472_200--Hb_002400_430 Hb_000419_110--Hb_002805_010 Hb_000419_110--Hb_000622_070 Hb_000419_110--Hb_027472_200 Hb_000419_110--Hb_100451_010 Hb_003147_010 Hb_003147_010 Hb_000419_110--Hb_003147_010 Hb_000749_100--Hb_002400_430 Hb_101624_010 Hb_101624_010 Hb_000749_100--Hb_101624_010 Hb_005031_010 Hb_005031_010 Hb_000749_100--Hb_005031_010 Hb_000749_100--Hb_100451_010 Hb_000749_100--Hb_027472_200 Hb_002217_290 Hb_002217_290 Hb_000749_100--Hb_002217_290 Hb_100451_010--Hb_003938_040 Hb_100451_010--Hb_007108_060 Hb_100451_010--Hb_006995_030 Hb_003226_270 Hb_003226_270 Hb_100451_010--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_100451_010--Hb_130470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0555239 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.789121 0 0.0408572 0.18604

CAGE analysis