Hb_000419_110

Information

Type -
Description -
Location Contig419: 124768-141292
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22900g
description POPTRDRAFT_770534; hypothetical protein
nr
ID KDP44356.1
description hypothetical protein JCGZ_20036 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20036 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000419_110 0.0 - - hypothetical protein JCGZ_20036 [Jatropha curcas]
2 Hb_002805_010 0.2304366741 - - -
3 Hb_000622_070 0.2648343102 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027472_200 0.2747063628 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_000251_140 0.2842835298 - - leucine-rich repeat containing protein, putative [Ricinus communis]
6 Hb_100451_010 0.2983237251 - - -
7 Hb_003147_010 0.3004746785 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
8 Hb_000749_100 0.3320318361 - - -
9 Hb_002249_060 0.332211113 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003938_040 0.3322905466 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
11 Hb_000788_140 0.3323195784 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001045_100 0.3434878943 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
13 Hb_005183_180 0.3447323376 - - alpha amylase family protein [Populus trichocarpa]
14 Hb_028487_090 0.3551247574 - - -
15 Hb_000016_070 0.3577878829 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
16 Hb_000019_020 0.3577878829 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
17 Hb_000019_160 0.3577878829 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
18 Hb_000029_230 0.3577878829 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
19 Hb_000032_170 0.3577878829 - - -
20 Hb_000042_170 0.3577878829 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000419_110 Hb_000419_110 Hb_002805_010 Hb_002805_010 Hb_000419_110--Hb_002805_010 Hb_000622_070 Hb_000622_070 Hb_000419_110--Hb_000622_070 Hb_027472_200 Hb_027472_200 Hb_000419_110--Hb_027472_200 Hb_000251_140 Hb_000251_140 Hb_000419_110--Hb_000251_140 Hb_100451_010 Hb_100451_010 Hb_000419_110--Hb_100451_010 Hb_003147_010 Hb_003147_010 Hb_000419_110--Hb_003147_010 Hb_002805_010--Hb_000622_070 Hb_000016_070 Hb_000016_070 Hb_002805_010--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_002805_010--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_002805_010--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_002805_010--Hb_000029_230 Hb_000032_170 Hb_000032_170 Hb_002805_010--Hb_000032_170 Hb_000622_070--Hb_000016_070 Hb_000622_070--Hb_000019_020 Hb_000622_070--Hb_000019_160 Hb_000622_070--Hb_000029_230 Hb_000622_070--Hb_000032_170 Hb_027472_200--Hb_100451_010 Hb_003938_040 Hb_003938_040 Hb_027472_200--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_027472_200--Hb_007108_060 Hb_006995_030 Hb_006995_030 Hb_027472_200--Hb_006995_030 Hb_005183_180 Hb_005183_180 Hb_027472_200--Hb_005183_180 Hb_002400_430 Hb_002400_430 Hb_027472_200--Hb_002400_430 Hb_000251_140--Hb_005183_180 Hb_000251_140--Hb_002805_010 Hb_000251_140--Hb_027472_200 Hb_000749_100 Hb_000749_100 Hb_000251_140--Hb_000749_100 Hb_000251_140--Hb_100451_010 Hb_100451_010--Hb_003938_040 Hb_100451_010--Hb_007108_060 Hb_100451_010--Hb_006995_030 Hb_003226_270 Hb_003226_270 Hb_100451_010--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_100451_010--Hb_130470_010 Hb_002249_060 Hb_002249_060 Hb_003147_010--Hb_002249_060 Hb_001045_100 Hb_001045_100 Hb_003147_010--Hb_001045_100 Hb_003147_010--Hb_000622_070 Hb_003147_010--Hb_000016_070 Hb_003147_010--Hb_000019_020 Hb_003147_010--Hb_000019_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0064936 0 0 0.00727196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.148576 0 0 0.0315363

CAGE analysis