Hb_001045_100

Information

Type -
Description -
Location Contig1045: 133857-139809
Sequence    

Annotation

kegg
ID cit:102611758
description uncharacterized LOC102611758
nr
ID XP_006494714.1
description PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001045_100 0.0 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
2 Hb_002249_060 0.0465720511 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_007407_030 0.2118896596 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
4 Hb_127120_010 0.2120821413 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_000976_220 0.2121342304 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
6 Hb_003147_010 0.2146099241 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
7 Hb_006684_020 0.2227820743 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_026113_020 0.2258525772 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000173_300 0.236329678 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
10 Hb_000016_070 0.2534267465 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
11 Hb_000019_020 0.2534267465 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
12 Hb_000019_160 0.2534267465 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
13 Hb_000029_230 0.2534267465 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
14 Hb_000032_170 0.2534267465 - - -
15 Hb_000042_170 0.2534267465 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
16 Hb_000050_210 0.2534267465 - - PREDICTED: uncharacterized protein LOC105797515 [Gossypium raimondii]
17 Hb_000083_100 0.2534267465 - - -
18 Hb_000094_270 0.2534267465 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
19 Hb_000099_100 0.2534267465 - - -
20 Hb_000107_600 0.2534267465 - - -

Gene co-expression network

sample Hb_001045_100 Hb_001045_100 Hb_002249_060 Hb_002249_060 Hb_001045_100--Hb_002249_060 Hb_007407_030 Hb_007407_030 Hb_001045_100--Hb_007407_030 Hb_127120_010 Hb_127120_010 Hb_001045_100--Hb_127120_010 Hb_000976_220 Hb_000976_220 Hb_001045_100--Hb_000976_220 Hb_003147_010 Hb_003147_010 Hb_001045_100--Hb_003147_010 Hb_006684_020 Hb_006684_020 Hb_001045_100--Hb_006684_020 Hb_002249_060--Hb_003147_010 Hb_000016_070 Hb_000016_070 Hb_002249_060--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_002249_060--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_002249_060--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_002249_060--Hb_000029_230 Hb_007407_030--Hb_127120_010 Hb_007407_030--Hb_000976_220 Hb_007407_030--Hb_006684_020 Hb_026113_020 Hb_026113_020 Hb_007407_030--Hb_026113_020 Hb_000173_300 Hb_000173_300 Hb_007407_030--Hb_000173_300 Hb_000529_120 Hb_000529_120 Hb_007407_030--Hb_000529_120 Hb_127120_010--Hb_000976_220 Hb_127120_010--Hb_006684_020 Hb_127120_010--Hb_026113_020 Hb_127120_010--Hb_000173_300 Hb_127120_010--Hb_000529_120 Hb_000976_220--Hb_006684_020 Hb_000976_220--Hb_026113_020 Hb_000976_220--Hb_000173_300 Hb_000976_220--Hb_000529_120 Hb_000622_070 Hb_000622_070 Hb_003147_010--Hb_000622_070 Hb_003147_010--Hb_000016_070 Hb_003147_010--Hb_000019_020 Hb_003147_010--Hb_000019_160 Hb_006684_020--Hb_026113_020 Hb_006684_020--Hb_000173_300 Hb_006684_020--Hb_000529_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0195836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.140068 0 0 0

CAGE analysis