Hb_002249_060

Information

Type -
Description -
Location Contig2249: 55772-56637
Sequence    

Annotation

kegg
ID rcu:RCOM_1503920
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002511099.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FIT7
description Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1
trembl
ID B9RA74
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1503920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_060 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001045_100 0.0465720511 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
3 Hb_003147_010 0.1990970286 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
4 Hb_000016_070 0.2144565347 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
5 Hb_000019_020 0.2144565347 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
6 Hb_000019_160 0.2144565347 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
7 Hb_000029_230 0.2144565347 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
8 Hb_000032_170 0.2144565347 - - -
9 Hb_000042_170 0.2144565347 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
10 Hb_000050_210 0.2144565347 - - PREDICTED: uncharacterized protein LOC105797515 [Gossypium raimondii]
11 Hb_000083_100 0.2144565347 - - -
12 Hb_000094_270 0.2144565347 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
13 Hb_000099_100 0.2144565347 - - -
14 Hb_000107_600 0.2144565347 - - -
15 Hb_000141_100 0.2144565347 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Jatropha curcas]
16 Hb_000155_220 0.2144565347 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 9-like [Jatropha curcas]
17 Hb_000161_110 0.2144565347 - - hypothetical protein POPTR_0012s02100g [Populus trichocarpa]
18 Hb_000175_570 0.2144565347 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
19 Hb_000190_250 0.2144565347 - - -
20 Hb_000223_130 0.2144565347 - - PREDICTED: uncharacterized protein LOC104891112 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_002249_060 Hb_002249_060 Hb_001045_100 Hb_001045_100 Hb_002249_060--Hb_001045_100 Hb_003147_010 Hb_003147_010 Hb_002249_060--Hb_003147_010 Hb_000016_070 Hb_000016_070 Hb_002249_060--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_002249_060--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_002249_060--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_002249_060--Hb_000029_230 Hb_007407_030 Hb_007407_030 Hb_001045_100--Hb_007407_030 Hb_127120_010 Hb_127120_010 Hb_001045_100--Hb_127120_010 Hb_000976_220 Hb_000976_220 Hb_001045_100--Hb_000976_220 Hb_001045_100--Hb_003147_010 Hb_006684_020 Hb_006684_020 Hb_001045_100--Hb_006684_020 Hb_000622_070 Hb_000622_070 Hb_003147_010--Hb_000622_070 Hb_003147_010--Hb_000016_070 Hb_003147_010--Hb_000019_020 Hb_003147_010--Hb_000019_160 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000032_170 Hb_000032_170 Hb_000016_070--Hb_000032_170 Hb_000042_170 Hb_000042_170 Hb_000016_070--Hb_000042_170 Hb_000050_210 Hb_000050_210 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210 Hb_000016_070--Hb_000019_020 Hb_000016_070--Hb_000019_160 Hb_000016_070--Hb_000029_230 Hb_000016_070--Hb_000032_170 Hb_000016_070--Hb_000042_170 Hb_000016_070--Hb_000050_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0355878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.364308 0 0 0

CAGE analysis