Hb_002249_200

Information

Type transcription factor
Description TF Family: LFY
Location Contig2249: 197714-200099
Sequence    

Annotation

kegg
ID tcc:TCM_014768
description Floricaula/leafy
nr
ID AGF33325.1
description LEAFY-like protein [Pistacia chinensis]
swissprot
ID O04064
description Floricaula/leafy homolog OS=Populus trichocarpa GN=FL PE=2 SV=2
trembl
ID M1LEY1
description LEAFY-like protein OS=Pistacia chinensis GN=BLFYM1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description leafy-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_200 0.0 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
2 Hb_025528_010 0.0110261002 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
3 Hb_005542_170 0.0473030371 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001244_030 0.0767530679 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_028527_010 0.0999820782 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_033095_050 0.1081100703 - - hypothetical protein VITISV_038692 [Vitis vinifera]
7 Hb_005031_010 0.1297010759 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
8 Hb_101624_010 0.1297612277 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_000668_210 0.1846245559 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
10 Hb_001072_060 0.1926169142 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
11 Hb_007924_040 0.1926537293 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
12 Hb_003683_100 0.1926730734 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000474_020 0.1927202686 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_035484_010 0.1960388702 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
15 Hb_002800_020 0.1993585254 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_007083_040 0.2029953229 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
17 Hb_002400_430 0.2114605734 - - -
18 Hb_000148_010 0.2146031731 - - -
19 Hb_029154_020 0.2262566302 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_029793_020 0.2263194468 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_002249_200 Hb_002249_200 Hb_025528_010 Hb_025528_010 Hb_002249_200--Hb_025528_010 Hb_005542_170 Hb_005542_170 Hb_002249_200--Hb_005542_170 Hb_001244_030 Hb_001244_030 Hb_002249_200--Hb_001244_030 Hb_028527_010 Hb_028527_010 Hb_002249_200--Hb_028527_010 Hb_033095_050 Hb_033095_050 Hb_002249_200--Hb_033095_050 Hb_005031_010 Hb_005031_010 Hb_002249_200--Hb_005031_010 Hb_025528_010--Hb_005542_170 Hb_025528_010--Hb_001244_030 Hb_025528_010--Hb_033095_050 Hb_025528_010--Hb_028527_010 Hb_025528_010--Hb_005031_010 Hb_005542_170--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_005542_170--Hb_101624_010 Hb_005542_170--Hb_033095_050 Hb_005542_170--Hb_001244_030 Hb_001244_030--Hb_028527_010 Hb_001244_030--Hb_033095_050 Hb_000474_020 Hb_000474_020 Hb_001244_030--Hb_000474_020 Hb_028527_010--Hb_005542_170 Hb_028527_010--Hb_033095_050 Hb_007083_040 Hb_007083_040 Hb_028527_010--Hb_007083_040 Hb_002800_020 Hb_002800_020 Hb_033095_050--Hb_002800_020 Hb_033095_050--Hb_005031_010 Hb_033095_050--Hb_101624_010 Hb_005031_010--Hb_101624_010 Hb_002400_430 Hb_002400_430 Hb_005031_010--Hb_002400_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0313204 0 0.012543 0.129751

CAGE analysis