Hb_002800_020

Information

Type -
Description -
Location Contig2800: 17994-19316
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002800_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_033095_050 0.0961587295 - - hypothetical protein VITISV_038692 [Vitis vinifera]
3 Hb_001596_010 0.113491352 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
4 Hb_005031_010 0.179285325 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_101624_010 0.1792857585 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_005542_170 0.1832309079 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_025528_010 0.1930387692 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
8 Hb_002249_200 0.1993585254 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
9 Hb_028527_010 0.2110310008 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
10 Hb_000148_010 0.2271887319 - - -
11 Hb_007083_040 0.2285019533 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
12 Hb_000495_060 0.2396110519 - - Osmotin precursor, putative [Ricinus communis]
13 Hb_001244_030 0.2436702043 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_136092_010 0.2587881233 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
15 Hb_000965_010 0.2592158614 - - hypothetical protein VITISV_016917 [Vitis vinifera]
16 Hb_011772_010 0.2778174765 - - -
17 Hb_000668_210 0.2779199429 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
18 Hb_003793_040 0.2804285597 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
19 Hb_105251_010 0.2804312444 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_001102_280 0.2804321274 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_002800_020 Hb_002800_020 Hb_033095_050 Hb_033095_050 Hb_002800_020--Hb_033095_050 Hb_001596_010 Hb_001596_010 Hb_002800_020--Hb_001596_010 Hb_005031_010 Hb_005031_010 Hb_002800_020--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_002800_020--Hb_101624_010 Hb_005542_170 Hb_005542_170 Hb_002800_020--Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_002800_020--Hb_025528_010 Hb_033095_050--Hb_005542_170 Hb_033095_050--Hb_025528_010 Hb_033095_050--Hb_005031_010 Hb_033095_050--Hb_101624_010 Hb_002249_200 Hb_002249_200 Hb_033095_050--Hb_002249_200 Hb_001596_010--Hb_033095_050 Hb_001596_010--Hb_101624_010 Hb_001596_010--Hb_005031_010 Hb_136092_010 Hb_136092_010 Hb_001596_010--Hb_136092_010 Hb_001596_010--Hb_005542_170 Hb_005031_010--Hb_101624_010 Hb_005031_010--Hb_005542_170 Hb_005031_010--Hb_025528_010 Hb_002400_430 Hb_002400_430 Hb_005031_010--Hb_002400_430 Hb_005031_010--Hb_002249_200 Hb_101624_010--Hb_005542_170 Hb_101624_010--Hb_025528_010 Hb_101624_010--Hb_002400_430 Hb_101624_010--Hb_002249_200 Hb_005542_170--Hb_025528_010 Hb_005542_170--Hb_002249_200 Hb_001244_030 Hb_001244_030 Hb_005542_170--Hb_001244_030 Hb_025528_010--Hb_002249_200 Hb_025528_010--Hb_001244_030 Hb_028527_010 Hb_028527_010 Hb_025528_010--Hb_028527_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0347154 0 0.0557025 0.143104

CAGE analysis