Hb_136092_010

Information

Type -
Description -
Location Contig136092: 493-792
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12290g
description POPTRDRAFT_780716; hypothetical protein
nr
ID XP_002326036.2
description hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
swissprot
ID B6VJS4
description Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2
trembl
ID B9IQS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12290g PE=4 SV=2
Gene Ontology
ID GO:0008171
description trans-resveratrol di-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136092_010 0.0 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
2 Hb_001596_010 0.1815275628 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
3 Hb_011772_010 0.2193505916 - - -
4 Hb_003935_010 0.2451802487 - - -
5 Hb_150366_010 0.2547718099 - - JHL22C18.10 [Jatropha curcas]
6 Hb_002800_020 0.2587881233 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_019253_010 0.2653208377 - - DNA-binding family protein [Populus trichocarpa]
8 Hb_033095_050 0.3335256075 - - hypothetical protein VITISV_038692 [Vitis vinifera]
9 Hb_000946_020 0.3336191029 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
10 Hb_169597_010 0.3342226973 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
11 Hb_003927_030 0.3345564711 - - unnamed protein product [Coffea canephora]
12 Hb_000052_030 0.3346538368 - - -
13 Hb_006261_010 0.335552086 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
14 Hb_007757_090 0.3362553991 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
15 Hb_002570_050 0.3370953728 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
16 Hb_005625_050 0.3372539477 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
17 Hb_000495_060 0.337691957 - - Osmotin precursor, putative [Ricinus communis]
18 Hb_000965_010 0.3393954066 - - hypothetical protein VITISV_016917 [Vitis vinifera]
19 Hb_093039_010 0.3400011354 - - JHL22C18.10 [Jatropha curcas]
20 Hb_000190_130 0.3406821997 - - cysteine protease inhibitor [Populus tremula]

Gene co-expression network

sample Hb_136092_010 Hb_136092_010 Hb_001596_010 Hb_001596_010 Hb_136092_010--Hb_001596_010 Hb_011772_010 Hb_011772_010 Hb_136092_010--Hb_011772_010 Hb_003935_010 Hb_003935_010 Hb_136092_010--Hb_003935_010 Hb_150366_010 Hb_150366_010 Hb_136092_010--Hb_150366_010 Hb_002800_020 Hb_002800_020 Hb_136092_010--Hb_002800_020 Hb_019253_010 Hb_019253_010 Hb_136092_010--Hb_019253_010 Hb_001596_010--Hb_002800_020 Hb_033095_050 Hb_033095_050 Hb_001596_010--Hb_033095_050 Hb_101624_010 Hb_101624_010 Hb_001596_010--Hb_101624_010 Hb_005031_010 Hb_005031_010 Hb_001596_010--Hb_005031_010 Hb_005542_170 Hb_005542_170 Hb_001596_010--Hb_005542_170 Hb_018202_060 Hb_018202_060 Hb_011772_010--Hb_018202_060 Hb_002965_130 Hb_002965_130 Hb_011772_010--Hb_002965_130 Hb_011772_010--Hb_019253_010 Hb_000330_120 Hb_000330_120 Hb_011772_010--Hb_000330_120 Hb_002570_050 Hb_002570_050 Hb_011772_010--Hb_002570_050 Hb_001226_190 Hb_001226_190 Hb_003935_010--Hb_001226_190 Hb_001210_100 Hb_001210_100 Hb_003935_010--Hb_001210_100 Hb_003935_010--Hb_001596_010 Hb_000340_050 Hb_000340_050 Hb_003935_010--Hb_000340_050 Hb_006810_010 Hb_006810_010 Hb_003935_010--Hb_006810_010 Hb_011618_020 Hb_011618_020 Hb_150366_010--Hb_011618_020 Hb_150366_010--Hb_011772_010 Hb_000084_080 Hb_000084_080 Hb_150366_010--Hb_000084_080 Hb_003297_040 Hb_003297_040 Hb_150366_010--Hb_003297_040 Hb_005625_050 Hb_005625_050 Hb_150366_010--Hb_005625_050 Hb_002800_020--Hb_033095_050 Hb_002800_020--Hb_005031_010 Hb_002800_020--Hb_101624_010 Hb_002800_020--Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_002800_020--Hb_025528_010 Hb_127507_010 Hb_127507_010 Hb_019253_010--Hb_127507_010 Hb_001900_130 Hb_001900_130 Hb_019253_010--Hb_001900_130 Hb_000946_030 Hb_000946_030 Hb_019253_010--Hb_000946_030 Hb_019253_010--Hb_000330_120 Hb_010866_010 Hb_010866_010 Hb_019253_010--Hb_010866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.29483 0 0.68422 0.455233

CAGE analysis