Hb_011618_020

Information

Type -
Description -
Location Contig11618: 21123-29426
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08410g
description POPTRDRAFT_774411; hypothetical protein
nr
ID EEC76216.1
description hypothetical protein OsI_13615 [Oryza sativa Indica Group]
swissprot
ID -
description -
trembl
ID M0TMD5
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016301
description receptor-like protein kinase herk 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_020 0.0 - - hypothetical protein OsI_13615 [Oryza sativa Indica Group]
2 Hb_169597_010 0.1653825464 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
3 Hb_003927_030 0.1655999519 - - unnamed protein product [Coffea canephora]
4 Hb_000052_030 0.1656815536 - - -
5 Hb_000946_020 0.1665616731 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
6 Hb_002570_050 0.1687554823 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
7 Hb_093039_010 0.1732967994 - - JHL22C18.10 [Jatropha curcas]
8 Hb_097933_010 0.1737912728 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
9 Hb_006261_010 0.1741375318 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
10 Hb_000190_130 0.1744132473 - - cysteine protease inhibitor [Populus tremula]
11 Hb_007757_090 0.1762244403 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
12 Hb_005625_050 0.1790281815 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
13 Hb_003780_010 0.1802696517 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000574_490 0.182574352 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
15 Hb_006907_110 0.1859738735 - - -
16 Hb_000575_050 0.1863809282 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
17 Hb_018202_060 0.1868238552 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
18 Hb_003297_040 0.1870754938 - - Disease resistance protein RPM1, putative [Ricinus communis]
19 Hb_021888_160 0.1874606808 - - -
20 Hb_019299_050 0.1883210043 - - -

Gene co-expression network

sample Hb_011618_020 Hb_011618_020 Hb_169597_010 Hb_169597_010 Hb_011618_020--Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_011618_020--Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_011618_020--Hb_000052_030 Hb_000946_020 Hb_000946_020 Hb_011618_020--Hb_000946_020 Hb_002570_050 Hb_002570_050 Hb_011618_020--Hb_002570_050 Hb_093039_010 Hb_093039_010 Hb_011618_020--Hb_093039_010 Hb_169597_010--Hb_003927_030 Hb_169597_010--Hb_000052_030 Hb_169597_010--Hb_000946_020 Hb_169597_010--Hb_002570_050 Hb_169597_010--Hb_093039_010 Hb_000190_130 Hb_000190_130 Hb_169597_010--Hb_000190_130 Hb_003927_030--Hb_000052_030 Hb_003927_030--Hb_002570_050 Hb_003927_030--Hb_000946_020 Hb_003927_030--Hb_093039_010 Hb_003927_030--Hb_000190_130 Hb_000052_030--Hb_002570_050 Hb_000052_030--Hb_000946_020 Hb_000052_030--Hb_093039_010 Hb_000052_030--Hb_000190_130 Hb_006261_010 Hb_006261_010 Hb_000946_020--Hb_006261_010 Hb_007757_090 Hb_007757_090 Hb_000946_020--Hb_007757_090 Hb_005625_050 Hb_005625_050 Hb_000946_020--Hb_005625_050 Hb_002570_050--Hb_093039_010 Hb_002570_050--Hb_000190_130 Hb_003780_010 Hb_003780_010 Hb_002570_050--Hb_003780_010 Hb_093039_010--Hb_000190_130 Hb_093039_010--Hb_003780_010 Hb_000574_490 Hb_000574_490 Hb_093039_010--Hb_000574_490 Hb_006907_110 Hb_006907_110 Hb_093039_010--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_093039_010--Hb_000575_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0093794 0 0.035436 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.459486 0.331829

CAGE analysis