Hb_127507_010

Information

Type -
Description -
Location Contig127507: 1504-1860
Sequence    

Annotation

kegg
ID bvg:104903465
description uncharacterized LOC104903465
nr
ID XP_010540891.1
description PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127507_010 0.0 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
2 Hb_010761_030 0.1794912345 - - cytochrome P450, putative [Ricinus communis]
3 Hb_121441_010 0.1808646664 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_000149_090 0.1820547481 - - -
5 Hb_009510_060 0.1870509471 - - -
6 Hb_010926_030 0.1949130194 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
7 Hb_064482_010 0.2035398191 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000644_040 0.2091594522 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
9 Hb_008692_020 0.2127436052 - - -
10 Hb_059780_010 0.2140602048 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
11 Hb_004712_020 0.2227126945 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
12 Hb_019253_010 0.2246627788 - - DNA-binding family protein [Populus trichocarpa]
13 Hb_002566_010 0.2249786802 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
14 Hb_132515_010 0.2263851813 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_054865_030 0.2267467 - - -
16 Hb_000982_120 0.2278175368 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
17 Hb_031931_030 0.2283466954 - - lipid binding protein, putative [Ricinus communis]
18 Hb_002122_040 0.2295940346 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_002490_090 0.2320156285 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
20 Hb_002555_030 0.2322381439 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]

Gene co-expression network

sample Hb_127507_010 Hb_127507_010 Hb_010761_030 Hb_010761_030 Hb_127507_010--Hb_010761_030 Hb_121441_010 Hb_121441_010 Hb_127507_010--Hb_121441_010 Hb_000149_090 Hb_000149_090 Hb_127507_010--Hb_000149_090 Hb_009510_060 Hb_009510_060 Hb_127507_010--Hb_009510_060 Hb_010926_030 Hb_010926_030 Hb_127507_010--Hb_010926_030 Hb_064482_010 Hb_064482_010 Hb_127507_010--Hb_064482_010 Hb_031931_030 Hb_031931_030 Hb_010761_030--Hb_031931_030 Hb_008692_020 Hb_008692_020 Hb_010761_030--Hb_008692_020 Hb_002870_010 Hb_002870_010 Hb_010761_030--Hb_002870_010 Hb_002566_010 Hb_002566_010 Hb_010761_030--Hb_002566_010 Hb_029769_010 Hb_029769_010 Hb_010761_030--Hb_029769_010 Hb_001136_030 Hb_001136_030 Hb_010761_030--Hb_001136_030 Hb_059780_010 Hb_059780_010 Hb_121441_010--Hb_059780_010 Hb_121441_010--Hb_000149_090 Hb_000982_120 Hb_000982_120 Hb_121441_010--Hb_000982_120 Hb_000675_040 Hb_000675_040 Hb_121441_010--Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_121441_010--Hb_145211_010 Hb_121441_010--Hb_002566_010 Hb_000149_090--Hb_009510_060 Hb_000149_090--Hb_010926_030 Hb_000644_040 Hb_000644_040 Hb_000149_090--Hb_000644_040 Hb_000149_090--Hb_002566_010 Hb_000149_090--Hb_008692_020 Hb_009510_060--Hb_010926_030 Hb_004712_020 Hb_004712_020 Hb_009510_060--Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_009510_060--Hb_012807_140 Hb_009510_060--Hb_064482_010 Hb_002122_040 Hb_002122_040 Hb_009510_060--Hb_002122_040 Hb_010926_030--Hb_004712_020 Hb_010926_030--Hb_012807_140 Hb_001105_200 Hb_001105_200 Hb_010926_030--Hb_001105_200 Hb_010926_030--Hb_002122_040 Hb_002997_050 Hb_002997_050 Hb_064482_010--Hb_002997_050 Hb_064482_010--Hb_000644_040 Hb_132515_010 Hb_132515_010 Hb_064482_010--Hb_132515_010 Hb_004713_050 Hb_004713_050 Hb_064482_010--Hb_004713_050 Hb_002555_030 Hb_002555_030 Hb_064482_010--Hb_002555_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.550933 0 0.499091 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.196911 0 1.56181 0.663025

CAGE analysis