Hb_002555_030

Information

Type -
Description -
Location Contig2555: 19498-22976
Sequence    

Annotation

kegg
ID mdm:103439198
description LRR receptor-like serine/threonine-protein kinase GSO1
nr
ID XP_008375968.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID F6H6I3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02100 PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002555_030 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
2 Hb_000644_040 0.0647511121 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
3 Hb_002997_050 0.1318503019 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
4 Hb_064482_010 0.1331857112 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000149_090 0.1368157147 - - -
6 Hb_006651_010 0.1396446284 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
7 Hb_018212_020 0.1461128745 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
8 Hb_145211_010 0.1496174576 - - hypothetical protein M569_05648, partial [Genlisea aurea]
9 Hb_020581_020 0.162998666 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
10 Hb_010866_010 0.1633850247 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
11 Hb_132515_010 0.1637339622 - - phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_003060_080 0.168474018 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
13 Hb_000675_040 0.1736192742 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
14 Hb_059780_010 0.1752094376 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
15 Hb_121441_010 0.1809338537 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_006970_100 0.1823147449 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000608_450 0.1825554266 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
18 Hb_108884_020 0.1843269025 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
19 Hb_006326_030 0.1847891424 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000363_020 0.1859599255 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002555_030 Hb_002555_030 Hb_000644_040 Hb_000644_040 Hb_002555_030--Hb_000644_040 Hb_002997_050 Hb_002997_050 Hb_002555_030--Hb_002997_050 Hb_064482_010 Hb_064482_010 Hb_002555_030--Hb_064482_010 Hb_000149_090 Hb_000149_090 Hb_002555_030--Hb_000149_090 Hb_006651_010 Hb_006651_010 Hb_002555_030--Hb_006651_010 Hb_018212_020 Hb_018212_020 Hb_002555_030--Hb_018212_020 Hb_000644_040--Hb_064482_010 Hb_000644_040--Hb_002997_050 Hb_000644_040--Hb_000149_090 Hb_132515_010 Hb_132515_010 Hb_000644_040--Hb_132515_010 Hb_121441_010 Hb_121441_010 Hb_000644_040--Hb_121441_010 Hb_002997_050--Hb_064482_010 Hb_004713_050 Hb_004713_050 Hb_002997_050--Hb_004713_050 Hb_002997_050--Hb_018212_020 Hb_010813_030 Hb_010813_030 Hb_002997_050--Hb_010813_030 Hb_064482_010--Hb_132515_010 Hb_064482_010--Hb_004713_050 Hb_009510_060 Hb_009510_060 Hb_064482_010--Hb_009510_060 Hb_000149_090--Hb_009510_060 Hb_010926_030 Hb_010926_030 Hb_000149_090--Hb_010926_030 Hb_000149_090--Hb_121441_010 Hb_002566_010 Hb_002566_010 Hb_000149_090--Hb_002566_010 Hb_008692_020 Hb_008692_020 Hb_000149_090--Hb_008692_020 Hb_006970_100 Hb_006970_100 Hb_006651_010--Hb_006970_100 Hb_003060_080 Hb_003060_080 Hb_006651_010--Hb_003060_080 Hb_033622_020 Hb_033622_020 Hb_006651_010--Hb_033622_020 Hb_007382_070 Hb_007382_070 Hb_006651_010--Hb_007382_070 Hb_135554_010 Hb_135554_010 Hb_006651_010--Hb_135554_010 Hb_001519_240 Hb_001519_240 Hb_006651_010--Hb_001519_240 Hb_018212_020--Hb_010813_030 Hb_000254_150 Hb_000254_150 Hb_018212_020--Hb_000254_150 Hb_018212_020--Hb_132515_010 Hb_006326_030 Hb_006326_030 Hb_018212_020--Hb_006326_030 Hb_006569_110 Hb_006569_110 Hb_018212_020--Hb_006569_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0185187 0 0.0052363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0637441 0.0284637

CAGE analysis