Hb_018212_020

Information

Type -
Description -
Location Contig18212: 14001-16736
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08570g
description hypothetical protein
nr
ID XP_012074974.1
description PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5GMH8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08570g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17759: 14015-14965 , PASA_asmbl_17760: 15134-15757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018212_020 0.0 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
2 Hb_010813_030 0.0771883789 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
3 Hb_000254_150 0.0967963894 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
4 Hb_132515_010 0.1077164815 - - phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_006326_030 0.1092940535 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006569_110 0.116759251 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002997_050 0.1275947327 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
8 Hb_064482_010 0.1338111336 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_003060_080 0.1377242847 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
10 Hb_000644_040 0.1411668494 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
11 Hb_005618_110 0.143331034 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_054865_030 0.1434606035 - - -
13 Hb_002555_030 0.1461128745 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
14 Hb_000876_050 0.1495250279 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
15 Hb_001611_010 0.1507821128 - - scab resistance family protein [Populus trichocarpa]
16 Hb_000920_360 0.1536295761 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
17 Hb_006651_010 0.1548761984 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
18 Hb_000177_120 0.1559940737 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
19 Hb_007894_260 0.1575589203 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_006938_010 0.159050045 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_018212_020 Hb_018212_020 Hb_010813_030 Hb_010813_030 Hb_018212_020--Hb_010813_030 Hb_000254_150 Hb_000254_150 Hb_018212_020--Hb_000254_150 Hb_132515_010 Hb_132515_010 Hb_018212_020--Hb_132515_010 Hb_006326_030 Hb_006326_030 Hb_018212_020--Hb_006326_030 Hb_006569_110 Hb_006569_110 Hb_018212_020--Hb_006569_110 Hb_002997_050 Hb_002997_050 Hb_018212_020--Hb_002997_050 Hb_010813_030--Hb_000254_150 Hb_000876_050 Hb_000876_050 Hb_010813_030--Hb_000876_050 Hb_010813_030--Hb_006326_030 Hb_010813_030--Hb_132515_010 Hb_001675_130 Hb_001675_130 Hb_010813_030--Hb_001675_130 Hb_000254_150--Hb_006569_110 Hb_005618_110 Hb_005618_110 Hb_000254_150--Hb_005618_110 Hb_000254_150--Hb_001675_130 Hb_006938_010 Hb_006938_010 Hb_000254_150--Hb_006938_010 Hb_054865_030 Hb_054865_030 Hb_132515_010--Hb_054865_030 Hb_064482_010 Hb_064482_010 Hb_132515_010--Hb_064482_010 Hb_000740_130 Hb_000740_130 Hb_132515_010--Hb_000740_130 Hb_003060_080 Hb_003060_080 Hb_132515_010--Hb_003060_080 Hb_132515_010--Hb_006326_030 Hb_000286_190 Hb_000286_190 Hb_006326_030--Hb_000286_190 Hb_000920_360 Hb_000920_360 Hb_006326_030--Hb_000920_360 Hb_006326_030--Hb_000876_050 Hb_006569_110--Hb_006938_010 Hb_007894_260 Hb_007894_260 Hb_006569_110--Hb_007894_260 Hb_006569_110--Hb_003060_080 Hb_002928_220 Hb_002928_220 Hb_006569_110--Hb_002928_220 Hb_006970_100 Hb_006970_100 Hb_006569_110--Hb_006970_100 Hb_002997_050--Hb_064482_010 Hb_000644_040 Hb_000644_040 Hb_002997_050--Hb_000644_040 Hb_004713_050 Hb_004713_050 Hb_002997_050--Hb_004713_050 Hb_002555_030 Hb_002555_030 Hb_002997_050--Hb_002555_030 Hb_002997_050--Hb_010813_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.75636 0.451072 1.00729 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0756662 0 12.577 5.47911

CAGE analysis