Hb_000644_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig644: 65694-68142
Sequence    

Annotation

kegg
ID mdm:103454444
description disease resistance protein RGA2-like
nr
ID CAN69089.1
description hypothetical protein VITISV_009157 [Vitis vinifera]
swissprot
ID A7XGN8
description Disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=1 SV=1
trembl
ID A5AJ31
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009157 PE=4 SV=1
Gene Ontology
ID GO:0004721
description lrr and nb-arc domains-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000644_040 0.0 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
2 Hb_002555_030 0.0647511121 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
3 Hb_064482_010 0.0868086627 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002997_050 0.0884030757 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
5 Hb_000149_090 0.1276323964 - - -
6 Hb_132515_010 0.1394763019 - - phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_121441_010 0.1398738244 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_145211_010 0.1400984286 - - hypothetical protein M569_05648, partial [Genlisea aurea]
9 Hb_018212_020 0.1411668494 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
10 Hb_000675_040 0.1492102224 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
11 Hb_059780_010 0.1545998325 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
12 Hb_054865_030 0.1588735499 - - -
13 Hb_009510_060 0.1651672973 - - -
14 Hb_006651_010 0.1660578189 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
15 Hb_004713_050 0.17167943 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
16 Hb_131320_010 0.1720699612 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
17 Hb_003060_080 0.1772578048 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
18 Hb_010926_030 0.1784194895 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
19 Hb_006326_030 0.1792444402 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010813_030 0.1809403071 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000644_040 Hb_000644_040 Hb_002555_030 Hb_002555_030 Hb_000644_040--Hb_002555_030 Hb_064482_010 Hb_064482_010 Hb_000644_040--Hb_064482_010 Hb_002997_050 Hb_002997_050 Hb_000644_040--Hb_002997_050 Hb_000149_090 Hb_000149_090 Hb_000644_040--Hb_000149_090 Hb_132515_010 Hb_132515_010 Hb_000644_040--Hb_132515_010 Hb_121441_010 Hb_121441_010 Hb_000644_040--Hb_121441_010 Hb_002555_030--Hb_002997_050 Hb_002555_030--Hb_064482_010 Hb_002555_030--Hb_000149_090 Hb_006651_010 Hb_006651_010 Hb_002555_030--Hb_006651_010 Hb_018212_020 Hb_018212_020 Hb_002555_030--Hb_018212_020 Hb_064482_010--Hb_002997_050 Hb_064482_010--Hb_132515_010 Hb_004713_050 Hb_004713_050 Hb_064482_010--Hb_004713_050 Hb_009510_060 Hb_009510_060 Hb_064482_010--Hb_009510_060 Hb_002997_050--Hb_004713_050 Hb_002997_050--Hb_018212_020 Hb_010813_030 Hb_010813_030 Hb_002997_050--Hb_010813_030 Hb_000149_090--Hb_009510_060 Hb_010926_030 Hb_010926_030 Hb_000149_090--Hb_010926_030 Hb_000149_090--Hb_121441_010 Hb_002566_010 Hb_002566_010 Hb_000149_090--Hb_002566_010 Hb_008692_020 Hb_008692_020 Hb_000149_090--Hb_008692_020 Hb_054865_030 Hb_054865_030 Hb_132515_010--Hb_054865_030 Hb_132515_010--Hb_018212_020 Hb_000740_130 Hb_000740_130 Hb_132515_010--Hb_000740_130 Hb_003060_080 Hb_003060_080 Hb_132515_010--Hb_003060_080 Hb_006326_030 Hb_006326_030 Hb_132515_010--Hb_006326_030 Hb_059780_010 Hb_059780_010 Hb_121441_010--Hb_059780_010 Hb_000982_120 Hb_000982_120 Hb_121441_010--Hb_000982_120 Hb_000675_040 Hb_000675_040 Hb_121441_010--Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_121441_010--Hb_145211_010 Hb_121441_010--Hb_002566_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0751459 0 0.0278716 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.19699 0.108346

CAGE analysis