Hb_008692_020

Information

Type -
Description -
Location Contig8692: 3317-3556
Sequence    

Annotation

kegg
ID dosa:Os12t0512150-00
description Os12g0512150; Hypothetical protein.
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61087: 3369-4101 , PASA_asmbl_61088: 4102-4224
cDNA
(Sanger)
(ID:Location)		 035_M01.ab1: 4102-4224

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008692_020 0.0 - - -
2 Hb_004712_020 0.1039808797 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
3 Hb_010761_030 0.105867421 - - cytochrome P450, putative [Ricinus communis]
4 Hb_031931_030 0.1077544615 - - lipid binding protein, putative [Ricinus communis]
5 Hb_002122_040 0.1101875123 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_002870_010 0.1113246444 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
7 Hb_001105_200 0.1137616719 - - catalytic, putative [Ricinus communis]
8 Hb_004881_060 0.1164429288 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
9 Hb_012807_140 0.1269977218 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
10 Hb_130563_010 0.1270660382 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
11 Hb_029769_010 0.128481927 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
12 Hb_000149_090 0.1312362859 - - -
13 Hb_003090_180 0.1340693058 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
14 Hb_001136_030 0.1347585673 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
15 Hb_001377_010 0.1371418459 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
16 Hb_010926_030 0.1418285272 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
17 Hb_009642_010 0.1435542197 - - Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_001104_210 0.1437005587 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
19 Hb_009510_060 0.1473811089 - - -
20 Hb_004223_180 0.1485723562 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]

Gene co-expression network

sample Hb_008692_020 Hb_008692_020 Hb_004712_020 Hb_004712_020 Hb_008692_020--Hb_004712_020 Hb_010761_030 Hb_010761_030 Hb_008692_020--Hb_010761_030 Hb_031931_030 Hb_031931_030 Hb_008692_020--Hb_031931_030 Hb_002122_040 Hb_002122_040 Hb_008692_020--Hb_002122_040 Hb_002870_010 Hb_002870_010 Hb_008692_020--Hb_002870_010 Hb_001105_200 Hb_001105_200 Hb_008692_020--Hb_001105_200 Hb_012807_140 Hb_012807_140 Hb_004712_020--Hb_012807_140 Hb_004712_020--Hb_001105_200 Hb_010926_030 Hb_010926_030 Hb_004712_020--Hb_010926_030 Hb_004712_020--Hb_002122_040 Hb_004712_020--Hb_002870_010 Hb_010761_030--Hb_031931_030 Hb_010761_030--Hb_002870_010 Hb_002566_010 Hb_002566_010 Hb_010761_030--Hb_002566_010 Hb_029769_010 Hb_029769_010 Hb_010761_030--Hb_029769_010 Hb_001136_030 Hb_001136_030 Hb_010761_030--Hb_001136_030 Hb_031931_030--Hb_002566_010 Hb_031931_030--Hb_029769_010 Hb_130563_010 Hb_130563_010 Hb_031931_030--Hb_130563_010 Hb_000982_120 Hb_000982_120 Hb_031931_030--Hb_000982_120 Hb_009642_010 Hb_009642_010 Hb_002122_040--Hb_009642_010 Hb_002122_040--Hb_001105_200 Hb_002122_040--Hb_012807_140 Hb_002122_040--Hb_002870_010 Hb_001377_010 Hb_001377_010 Hb_002870_010--Hb_001377_010 Hb_001514_070 Hb_001514_070 Hb_002870_010--Hb_001514_070 Hb_002870_010--Hb_001136_030 Hb_001104_210 Hb_001104_210 Hb_002870_010--Hb_001104_210 Hb_002870_010--Hb_012807_140 Hb_003090_180 Hb_003090_180 Hb_002870_010--Hb_003090_180 Hb_001105_200--Hb_012807_140 Hb_001105_200--Hb_009642_010 Hb_000205_210 Hb_000205_210 Hb_001105_200--Hb_000205_210 Hb_004881_060 Hb_004881_060 Hb_001105_200--Hb_004881_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.655214 32.6451 3.6538 44.669 1.00279 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43116 0.569263 0 158.728 38.9849

CAGE analysis