Hb_029769_010

Information

Type -
Description -
Location Contig29769: 54-601
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00450g
description hypothetical protein
nr
ID XP_011007854.1
description PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5FQT8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s00450g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029769_010 0.0 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
2 Hb_031931_030 0.100524232 - - lipid binding protein, putative [Ricinus communis]
3 Hb_008692_020 0.128481927 - - -
4 Hb_010761_030 0.1288845297 - - cytochrome P450, putative [Ricinus communis]
5 Hb_002566_010 0.1300549557 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
6 Hb_008768_010 0.1394443986 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
7 Hb_000149_090 0.1418916523 - - -
8 Hb_011671_420 0.1435581395 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
9 Hb_036069_020 0.1442610615 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
10 Hb_001136_030 0.1465969885 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
11 Hb_130563_010 0.1516530722 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
12 Hb_001218_070 0.1516713268 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
13 Hb_002870_010 0.1549481547 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
14 Hb_000683_010 0.1557153764 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
15 Hb_000911_050 0.1617915394 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
16 Hb_001105_200 0.1619880902 - - catalytic, putative [Ricinus communis]
17 Hb_004881_060 0.1627942313 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
18 Hb_000205_210 0.1632631757 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
19 Hb_001377_010 0.1635255889 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
20 Hb_000422_020 0.1700336014 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_029769_010 Hb_029769_010 Hb_031931_030 Hb_031931_030 Hb_029769_010--Hb_031931_030 Hb_008692_020 Hb_008692_020 Hb_029769_010--Hb_008692_020 Hb_010761_030 Hb_010761_030 Hb_029769_010--Hb_010761_030 Hb_002566_010 Hb_002566_010 Hb_029769_010--Hb_002566_010 Hb_008768_010 Hb_008768_010 Hb_029769_010--Hb_008768_010 Hb_000149_090 Hb_000149_090 Hb_029769_010--Hb_000149_090 Hb_031931_030--Hb_010761_030 Hb_031931_030--Hb_002566_010 Hb_031931_030--Hb_008692_020 Hb_130563_010 Hb_130563_010 Hb_031931_030--Hb_130563_010 Hb_000982_120 Hb_000982_120 Hb_031931_030--Hb_000982_120 Hb_004712_020 Hb_004712_020 Hb_008692_020--Hb_004712_020 Hb_008692_020--Hb_010761_030 Hb_002122_040 Hb_002122_040 Hb_008692_020--Hb_002122_040 Hb_002870_010 Hb_002870_010 Hb_008692_020--Hb_002870_010 Hb_001105_200 Hb_001105_200 Hb_008692_020--Hb_001105_200 Hb_010761_030--Hb_002870_010 Hb_010761_030--Hb_002566_010 Hb_001136_030 Hb_001136_030 Hb_010761_030--Hb_001136_030 Hb_002566_010--Hb_000982_120 Hb_059780_010 Hb_059780_010 Hb_002566_010--Hb_059780_010 Hb_145211_010 Hb_145211_010 Hb_002566_010--Hb_145211_010 Hb_002566_010--Hb_000149_090 Hb_000422_020 Hb_000422_020 Hb_008768_010--Hb_000422_020 Hb_000683_010 Hb_000683_010 Hb_008768_010--Hb_000683_010 Hb_004881_060 Hb_004881_060 Hb_008768_010--Hb_004881_060 Hb_025526_010 Hb_025526_010 Hb_008768_010--Hb_025526_010 Hb_000205_210 Hb_000205_210 Hb_008768_010--Hb_000205_210 Hb_011671_420 Hb_011671_420 Hb_008768_010--Hb_011671_420 Hb_009510_060 Hb_009510_060 Hb_000149_090--Hb_009510_060 Hb_010926_030 Hb_010926_030 Hb_000149_090--Hb_010926_030 Hb_121441_010 Hb_121441_010 Hb_000149_090--Hb_121441_010 Hb_000644_040 Hb_000644_040 Hb_000149_090--Hb_000644_040 Hb_000149_090--Hb_008692_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0869308 1.69693 0.156848 2.7422 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.206475 13.7197 3.41127

CAGE analysis