Hb_001596_010

Information

Type -
Description -
Location Contig1596: 1491-5358
Sequence    

Annotation

kegg
ID pop:POPTR_0001s181102
description hypothetical protein
nr
ID XP_006369174.1
description hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GQ67
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s181102g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001596_010 0.0 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
2 Hb_002800_020 0.113491352 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_033095_050 0.1628086228 - - hypothetical protein VITISV_038692 [Vitis vinifera]
4 Hb_101624_010 0.1803513124 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_005031_010 0.1803869496 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
6 Hb_136092_010 0.1815275628 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
7 Hb_005542_170 0.2283769393 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000965_010 0.2452291097 - - hypothetical protein VITISV_016917 [Vitis vinifera]
9 Hb_025528_010 0.2527921894 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
10 Hb_002249_200 0.2620349777 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
11 Hb_000148_010 0.2712128326 - - -
12 Hb_011772_010 0.2768901169 - - -
13 Hb_000495_060 0.2775936924 - - Osmotin precursor, putative [Ricinus communis]
14 Hb_002400_430 0.2777489936 - - -
15 Hb_000922_210 0.2956265075 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
16 Hb_002217_290 0.2956678321 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
17 Hb_028527_010 0.3046675617 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_000749_100 0.3090747916 - - -
19 Hb_003935_010 0.3103219873 - - -
20 Hb_007083_040 0.3164172375 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001596_010 Hb_001596_010 Hb_002800_020 Hb_002800_020 Hb_001596_010--Hb_002800_020 Hb_033095_050 Hb_033095_050 Hb_001596_010--Hb_033095_050 Hb_101624_010 Hb_101624_010 Hb_001596_010--Hb_101624_010 Hb_005031_010 Hb_005031_010 Hb_001596_010--Hb_005031_010 Hb_136092_010 Hb_136092_010 Hb_001596_010--Hb_136092_010 Hb_005542_170 Hb_005542_170 Hb_001596_010--Hb_005542_170 Hb_002800_020--Hb_033095_050 Hb_002800_020--Hb_005031_010 Hb_002800_020--Hb_101624_010 Hb_002800_020--Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_002800_020--Hb_025528_010 Hb_033095_050--Hb_005542_170 Hb_033095_050--Hb_025528_010 Hb_033095_050--Hb_005031_010 Hb_033095_050--Hb_101624_010 Hb_002249_200 Hb_002249_200 Hb_033095_050--Hb_002249_200 Hb_101624_010--Hb_005031_010 Hb_101624_010--Hb_005542_170 Hb_101624_010--Hb_025528_010 Hb_002400_430 Hb_002400_430 Hb_101624_010--Hb_002400_430 Hb_101624_010--Hb_002249_200 Hb_005031_010--Hb_005542_170 Hb_005031_010--Hb_025528_010 Hb_005031_010--Hb_002400_430 Hb_005031_010--Hb_002249_200 Hb_011772_010 Hb_011772_010 Hb_136092_010--Hb_011772_010 Hb_003935_010 Hb_003935_010 Hb_136092_010--Hb_003935_010 Hb_150366_010 Hb_150366_010 Hb_136092_010--Hb_150366_010 Hb_136092_010--Hb_002800_020 Hb_019253_010 Hb_019253_010 Hb_136092_010--Hb_019253_010 Hb_005542_170--Hb_025528_010 Hb_005542_170--Hb_002249_200 Hb_001244_030 Hb_001244_030 Hb_005542_170--Hb_001244_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0217638 0 0.0260262 0.0457209

CAGE analysis