Hb_011772_010

Information

Type -
Description -
Location Contig11772: 14238-18303
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011772_010 0.0 - - -
2 Hb_018202_060 0.2154628746 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
3 Hb_002965_130 0.2167714799 - - PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
4 Hb_136092_010 0.2193505916 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
5 Hb_019253_010 0.2253206444 - - DNA-binding family protein [Populus trichocarpa]
6 Hb_000330_120 0.2330460153 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
7 Hb_002570_050 0.2376303392 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
8 Hb_000052_030 0.2380983818 - - -
9 Hb_003927_030 0.2381905758 - - unnamed protein product [Coffea canephora]
10 Hb_169597_010 0.2386160853 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
11 Hb_093039_010 0.2387759687 - - JHL22C18.10 [Jatropha curcas]
12 Hb_000190_130 0.2391629744 - - cysteine protease inhibitor [Populus tremula]
13 Hb_003780_010 0.2415561279 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000946_020 0.2421331943 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
15 Hb_000574_490 0.2426186903 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
16 Hb_006907_110 0.2442770413 - - -
17 Hb_000575_050 0.24448201 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
18 Hb_021888_160 0.2450317657 - - -
19 Hb_000501_080 0.2469810115 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
20 Hb_174662_020 0.2470691111 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_011772_010 Hb_011772_010 Hb_018202_060 Hb_018202_060 Hb_011772_010--Hb_018202_060 Hb_002965_130 Hb_002965_130 Hb_011772_010--Hb_002965_130 Hb_136092_010 Hb_136092_010 Hb_011772_010--Hb_136092_010 Hb_019253_010 Hb_019253_010 Hb_011772_010--Hb_019253_010 Hb_000330_120 Hb_000330_120 Hb_011772_010--Hb_000330_120 Hb_002570_050 Hb_002570_050 Hb_011772_010--Hb_002570_050 Hb_007757_090 Hb_007757_090 Hb_018202_060--Hb_007757_090 Hb_006261_010 Hb_006261_010 Hb_018202_060--Hb_006261_010 Hb_005625_050 Hb_005625_050 Hb_018202_060--Hb_005625_050 Hb_019299_050 Hb_019299_050 Hb_018202_060--Hb_019299_050 Hb_026284_010 Hb_026284_010 Hb_018202_060--Hb_026284_010 Hb_000946_020 Hb_000946_020 Hb_018202_060--Hb_000946_020 Hb_002965_130--Hb_018202_060 Hb_002965_130--Hb_026284_010 Hb_094439_030 Hb_094439_030 Hb_002965_130--Hb_094439_030 Hb_002965_130--Hb_000330_120 Hb_000946_030 Hb_000946_030 Hb_002965_130--Hb_000946_030 Hb_105134_010 Hb_105134_010 Hb_002965_130--Hb_105134_010 Hb_001596_010 Hb_001596_010 Hb_136092_010--Hb_001596_010 Hb_003935_010 Hb_003935_010 Hb_136092_010--Hb_003935_010 Hb_150366_010 Hb_150366_010 Hb_136092_010--Hb_150366_010 Hb_002800_020 Hb_002800_020 Hb_136092_010--Hb_002800_020 Hb_136092_010--Hb_019253_010 Hb_127507_010 Hb_127507_010 Hb_019253_010--Hb_127507_010 Hb_001900_130 Hb_001900_130 Hb_019253_010--Hb_001900_130 Hb_019253_010--Hb_000946_030 Hb_019253_010--Hb_000330_120 Hb_010866_010 Hb_010866_010 Hb_019253_010--Hb_010866_010 Hb_000330_120--Hb_000946_030 Hb_078081_020 Hb_078081_020 Hb_000330_120--Hb_078081_020 Hb_000330_120--Hb_094439_030 Hb_000330_120--Hb_026284_010 Hb_000751_050 Hb_000751_050 Hb_000330_120--Hb_000751_050 Hb_093039_010 Hb_093039_010 Hb_002570_050--Hb_093039_010 Hb_000190_130 Hb_000190_130 Hb_002570_050--Hb_000190_130 Hb_000052_030 Hb_000052_030 Hb_002570_050--Hb_000052_030 Hb_003927_030 Hb_003927_030 Hb_002570_050--Hb_003927_030 Hb_169597_010 Hb_169597_010 Hb_002570_050--Hb_169597_010 Hb_003780_010 Hb_003780_010 Hb_002570_050--Hb_003780_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0467804 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0850428 0 0.594606 0.489949

CAGE analysis