Hb_001244_030

Information

Type -
Description -
Location Contig1244: 77554-81861
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001244_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_028527_010 0.0602818338 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
3 Hb_002249_200 0.0767530679 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
4 Hb_025528_010 0.0876186848 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
5 Hb_005542_170 0.1237684242 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_033095_050 0.1660546816 - - hypothetical protein VITISV_038692 [Vitis vinifera]
7 Hb_000474_020 0.1719006145 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_003683_100 0.1724864225 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_007924_040 0.1727998414 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
10 Hb_001072_060 0.1747469659 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
11 Hb_000668_210 0.1842013147 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
12 Hb_007083_040 0.1894436468 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
13 Hb_035484_010 0.191424386 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
14 Hb_005031_010 0.2053604032 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
15 Hb_101624_010 0.2054199064 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_007908_010 0.2117784281 - - -
17 Hb_026988_030 0.218583019 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
18 Hb_012753_070 0.2249276874 - - hypothetical protein VITISV_033646 [Vitis vinifera]
19 Hb_007970_040 0.2348770879 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
20 Hb_000148_010 0.2399969785 - - -

Gene co-expression network

sample Hb_001244_030 Hb_001244_030 Hb_028527_010 Hb_028527_010 Hb_001244_030--Hb_028527_010 Hb_002249_200 Hb_002249_200 Hb_001244_030--Hb_002249_200 Hb_025528_010 Hb_025528_010 Hb_001244_030--Hb_025528_010 Hb_005542_170 Hb_005542_170 Hb_001244_030--Hb_005542_170 Hb_033095_050 Hb_033095_050 Hb_001244_030--Hb_033095_050 Hb_000474_020 Hb_000474_020 Hb_001244_030--Hb_000474_020 Hb_028527_010--Hb_002249_200 Hb_028527_010--Hb_025528_010 Hb_028527_010--Hb_005542_170 Hb_028527_010--Hb_033095_050 Hb_007083_040 Hb_007083_040 Hb_028527_010--Hb_007083_040 Hb_002249_200--Hb_025528_010 Hb_002249_200--Hb_005542_170 Hb_002249_200--Hb_033095_050 Hb_005031_010 Hb_005031_010 Hb_002249_200--Hb_005031_010 Hb_025528_010--Hb_005542_170 Hb_025528_010--Hb_033095_050 Hb_025528_010--Hb_005031_010 Hb_005542_170--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_005542_170--Hb_101624_010 Hb_005542_170--Hb_033095_050 Hb_002800_020 Hb_002800_020 Hb_033095_050--Hb_002800_020 Hb_033095_050--Hb_005031_010 Hb_033095_050--Hb_101624_010 Hb_003683_100 Hb_003683_100 Hb_000474_020--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_000474_020--Hb_007924_040 Hb_001072_060 Hb_001072_060 Hb_000474_020--Hb_001072_060 Hb_035484_010 Hb_035484_010 Hb_000474_020--Hb_035484_010 Hb_029154_020 Hb_029154_020 Hb_000474_020--Hb_029154_020 Hb_029793_020 Hb_029793_020 Hb_000474_020--Hb_029793_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0087971 0 0.00348476 0.0565319

CAGE analysis