Hb_000084_080

Information

Type -
Description -
Location Contig84: 86692-87094
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07950g
description POPTRDRAFT_1103700; hypothetical protein
nr
ID XP_012072979.1
description PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06763 PE=3 SV=1
Gene Ontology
ID GO:0048500
description signal recognition particle 54 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_080 0.0 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_138607_010 0.210319082 - - hypothetical protein RCOM_0725500 [Ricinus communis]
3 Hb_171900_010 0.2442010313 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011618_020 0.2582317614 - - hypothetical protein OsI_13615 [Oryza sativa Indica Group]
5 Hb_150366_010 0.2587549175 - - JHL22C18.10 [Jatropha curcas]
6 Hb_001221_120 0.2662255805 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002890_050 0.2662990776 - - -
8 Hb_014034_010 0.2663338631 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001514_160 0.2665484823 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
10 Hb_009142_030 0.2666596611 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_055880_010 0.2668573345 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_159957_020 0.2694550848 - - -
13 Hb_000159_030 0.2697170596 - - putative glycosyltransferase, partial [Aralia elata]
14 Hb_000967_030 0.2729865954 - - -
15 Hb_039791_010 0.2734650076 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
16 Hb_003297_040 0.2751187694 - - Disease resistance protein RPM1, putative [Ricinus communis]
17 Hb_054343_010 0.2764825928 - - PREDICTED: uncharacterized protein LOC105793279 [Gossypium raimondii]
18 Hb_035726_010 0.2786513635 - - Insulin-degrading enzyme, putative [Ricinus communis]
19 Hb_001496_020 0.2800972106 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
20 Hb_019299_050 0.2839364708 - - -

Gene co-expression network

sample Hb_000084_080 Hb_000084_080 Hb_138607_010 Hb_138607_010 Hb_000084_080--Hb_138607_010 Hb_171900_010 Hb_171900_010 Hb_000084_080--Hb_171900_010 Hb_011618_020 Hb_011618_020 Hb_000084_080--Hb_011618_020 Hb_150366_010 Hb_150366_010 Hb_000084_080--Hb_150366_010 Hb_001221_120 Hb_001221_120 Hb_000084_080--Hb_001221_120 Hb_002890_050 Hb_002890_050 Hb_000084_080--Hb_002890_050 Hb_138607_010--Hb_171900_010 Hb_001959_280 Hb_001959_280 Hb_138607_010--Hb_001959_280 Hb_015227_010 Hb_015227_010 Hb_138607_010--Hb_015227_010 Hb_054343_010 Hb_054343_010 Hb_138607_010--Hb_054343_010 Hb_035726_010 Hb_035726_010 Hb_138607_010--Hb_035726_010 Hb_171900_010--Hb_054343_010 Hb_009557_010 Hb_009557_010 Hb_171900_010--Hb_009557_010 Hb_000967_030 Hb_000967_030 Hb_171900_010--Hb_000967_030 Hb_000159_030 Hb_000159_030 Hb_171900_010--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_171900_010--Hb_159957_020 Hb_019299_050 Hb_019299_050 Hb_171900_010--Hb_019299_050 Hb_169597_010 Hb_169597_010 Hb_011618_020--Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_011618_020--Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_011618_020--Hb_000052_030 Hb_000946_020 Hb_000946_020 Hb_011618_020--Hb_000946_020 Hb_002570_050 Hb_002570_050 Hb_011618_020--Hb_002570_050 Hb_093039_010 Hb_093039_010 Hb_011618_020--Hb_093039_010 Hb_150366_010--Hb_011618_020 Hb_136092_010 Hb_136092_010 Hb_150366_010--Hb_136092_010 Hb_011772_010 Hb_011772_010 Hb_150366_010--Hb_011772_010 Hb_003297_040 Hb_003297_040 Hb_150366_010--Hb_003297_040 Hb_005625_050 Hb_005625_050 Hb_150366_010--Hb_005625_050 Hb_001221_120--Hb_002890_050 Hb_014034_010 Hb_014034_010 Hb_001221_120--Hb_014034_010 Hb_001514_160 Hb_001514_160 Hb_001221_120--Hb_001514_160 Hb_009142_030 Hb_009142_030 Hb_001221_120--Hb_009142_030 Hb_055880_010 Hb_055880_010 Hb_001221_120--Hb_055880_010 Hb_001221_120--Hb_159957_020 Hb_002890_050--Hb_014034_010 Hb_002890_050--Hb_001514_160 Hb_002890_050--Hb_009142_030 Hb_002890_050--Hb_055880_010 Hb_002890_050--Hb_159957_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.226822 0 0 0 0.651002 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.46103 1.18111

CAGE analysis