Hb_054343_010

Information

Type -
Description -
Location Contig54343: 21-791
Sequence    

Annotation

kegg
ID tcc:TCM_028459
description Gag protease polyprotein
nr
ID XP_012477659.1
description PREDICTED: uncharacterized protein LOC105793279 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061GAL1
description Gag protease polyprotein OS=Theobroma cacao GN=TCM_028459 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054343_010 0.0 - - PREDICTED: uncharacterized protein LOC105793279 [Gossypium raimondii]
2 Hb_171900_010 0.0979178349 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009557_010 0.1158204417 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_138607_010 0.2294539776 - - hypothetical protein RCOM_0725500 [Ricinus communis]
5 Hb_023142_010 0.2603611437 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
6 Hb_128193_010 0.2611416285 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
7 Hb_000159_030 0.2714003128 - - putative glycosyltransferase, partial [Aralia elata]
8 Hb_159957_020 0.2714302677 - - -
9 Hb_000967_030 0.2716738851 - - -
10 Hb_055880_010 0.2728412172 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_009142_030 0.2731566406 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_001514_160 0.2733767175 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
13 Hb_014034_010 0.2739607294 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_002890_050 0.2740905485 - - -
15 Hb_001221_120 0.2744336724 - - cytochrome P450, putative [Ricinus communis]
16 Hb_019299_050 0.2761486218 - - -
17 Hb_000084_080 0.2764825928 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_005625_050 0.2807789809 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
19 Hb_007757_090 0.2827871427 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
20 Hb_006261_010 0.2845742286 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_054343_010 Hb_054343_010 Hb_171900_010 Hb_171900_010 Hb_054343_010--Hb_171900_010 Hb_009557_010 Hb_009557_010 Hb_054343_010--Hb_009557_010 Hb_138607_010 Hb_138607_010 Hb_054343_010--Hb_138607_010 Hb_023142_010 Hb_023142_010 Hb_054343_010--Hb_023142_010 Hb_128193_010 Hb_128193_010 Hb_054343_010--Hb_128193_010 Hb_000159_030 Hb_000159_030 Hb_054343_010--Hb_000159_030 Hb_171900_010--Hb_009557_010 Hb_000967_030 Hb_000967_030 Hb_171900_010--Hb_000967_030 Hb_171900_010--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_171900_010--Hb_159957_020 Hb_019299_050 Hb_019299_050 Hb_171900_010--Hb_019299_050 Hb_009557_010--Hb_128193_010 Hb_009557_010--Hb_023142_010 Hb_001629_040 Hb_001629_040 Hb_009557_010--Hb_001629_040 Hb_000009_010 Hb_000009_010 Hb_009557_010--Hb_000009_010 Hb_138607_010--Hb_171900_010 Hb_000084_080 Hb_000084_080 Hb_138607_010--Hb_000084_080 Hb_001959_280 Hb_001959_280 Hb_138607_010--Hb_001959_280 Hb_015227_010 Hb_015227_010 Hb_138607_010--Hb_015227_010 Hb_035726_010 Hb_035726_010 Hb_138607_010--Hb_035726_010 Hb_023142_010--Hb_128193_010 Hb_097933_010 Hb_097933_010 Hb_023142_010--Hb_097933_010 Hb_188163_010 Hb_188163_010 Hb_023142_010--Hb_188163_010 Hb_023142_010--Hb_171900_010 Hb_010129_020 Hb_010129_020 Hb_023142_010--Hb_010129_020 Hb_128193_010--Hb_001629_040 Hb_128193_010--Hb_000009_010 Hb_031866_030 Hb_031866_030 Hb_128193_010--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_128193_010--Hb_009152_030 Hb_000159_030--Hb_159957_020 Hb_000159_030--Hb_000967_030 Hb_055880_010 Hb_055880_010 Hb_000159_030--Hb_055880_010 Hb_009142_030 Hb_009142_030 Hb_000159_030--Hb_009142_030 Hb_001514_160 Hb_001514_160 Hb_000159_030--Hb_001514_160 Hb_014034_010 Hb_014034_010 Hb_000159_030--Hb_014034_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0749452 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.34198 0.119521

CAGE analysis