Hb_128193_010

Information

Type -
Description -
Location Contig128193: 150-569
Sequence    

Annotation

kegg
ID pda:103699534
description uncharacterized LOC103699534
nr
ID XP_008779776.1
description PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128193_010 0.0 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
2 Hb_001629_040 0.082018277 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
3 Hb_000009_010 0.1169570976 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
4 Hb_009557_010 0.1697578672 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_023142_010 0.1953194804 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
6 Hb_031866_030 0.2173698238 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
7 Hb_009152_030 0.2223168471 - - hypothetical protein L484_026849 [Morus notabilis]
8 Hb_010164_040 0.2255054499 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_002060_040 0.2286488065 - - putative polyprotein [Oryza sativa Japonica Group]
10 Hb_033066_030 0.2292655033 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
11 Hb_097006_010 0.2402000855 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
12 Hb_054343_010 0.2611416285 - - PREDICTED: uncharacterized protein LOC105793279 [Gossypium raimondii]
13 Hb_171900_010 0.270124658 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001878_030 0.2760521525 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
15 Hb_002387_030 0.281439807 - - conserved hypothetical protein [Ricinus communis]
16 Hb_042083_020 0.2815700697 - - -
17 Hb_007622_010 0.2815969509 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
18 Hb_002110_220 0.2817421292 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003940_060 0.2819740595 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
20 Hb_029695_040 0.282163539 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_128193_010 Hb_128193_010 Hb_001629_040 Hb_001629_040 Hb_128193_010--Hb_001629_040 Hb_000009_010 Hb_000009_010 Hb_128193_010--Hb_000009_010 Hb_009557_010 Hb_009557_010 Hb_128193_010--Hb_009557_010 Hb_023142_010 Hb_023142_010 Hb_128193_010--Hb_023142_010 Hb_031866_030 Hb_031866_030 Hb_128193_010--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_128193_010--Hb_009152_030 Hb_001629_040--Hb_000009_010 Hb_001629_040--Hb_031866_030 Hb_001629_040--Hb_009152_030 Hb_002060_040 Hb_002060_040 Hb_001629_040--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_001629_040--Hb_033066_030 Hb_000009_010--Hb_031866_030 Hb_000009_010--Hb_002060_040 Hb_000009_010--Hb_033066_030 Hb_000009_010--Hb_009152_030 Hb_054343_010 Hb_054343_010 Hb_009557_010--Hb_054343_010 Hb_171900_010 Hb_171900_010 Hb_009557_010--Hb_171900_010 Hb_009557_010--Hb_023142_010 Hb_009557_010--Hb_001629_040 Hb_009557_010--Hb_000009_010 Hb_097933_010 Hb_097933_010 Hb_023142_010--Hb_097933_010 Hb_188163_010 Hb_188163_010 Hb_023142_010--Hb_188163_010 Hb_023142_010--Hb_171900_010 Hb_010129_020 Hb_010129_020 Hb_023142_010--Hb_010129_020 Hb_031866_030--Hb_002060_040 Hb_031866_030--Hb_033066_030 Hb_031866_030--Hb_009152_030 Hb_000789_140 Hb_000789_140 Hb_031866_030--Hb_000789_140 Hb_009152_030--Hb_002060_040 Hb_009152_030--Hb_033066_030 Hb_009152_030--Hb_000789_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0768978 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.181943 0.254935

CAGE analysis