Hb_000789_140

Information

Type -
Description -
Location Contig789: 83002-85011
Sequence    

Annotation

kegg
ID cam:101494113
description uncharacterized LOC101494113
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQP6
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_035774 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_140 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_000155_240 0.0453183628 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
3 Hb_038508_010 0.0832160174 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
4 Hb_009152_030 0.121378236 - - hypothetical protein L484_026849 [Morus notabilis]
5 Hb_031866_030 0.1632604176 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
6 Hb_002060_040 0.1689585839 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_033066_030 0.169307303 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
8 Hb_000009_010 0.2163440943 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
9 Hb_001629_040 0.2273163455 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
10 Hb_002042_240 0.2305918163 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_079902_030 0.2321192278 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002850_030 0.2324173042 - - -
13 Hb_016354_010 0.2354116812 - - -
14 Hb_012235_010 0.2448352317 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
15 Hb_075722_010 0.2539389806 - - hypothetical protein JCGZ_01984 [Jatropha curcas]
16 Hb_012807_090 0.270144367 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
17 Hb_004951_050 0.2741147907 - - conserved hypothetical protein [Ricinus communis]
18 Hb_014929_010 0.2761015594 - - -
19 Hb_000143_070 0.2805542358 - - -
20 Hb_000300_460 0.2842789374 - - Mavicyanin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000789_140 Hb_000789_140 Hb_000155_240 Hb_000155_240 Hb_000789_140--Hb_000155_240 Hb_038508_010 Hb_038508_010 Hb_000789_140--Hb_038508_010 Hb_009152_030 Hb_009152_030 Hb_000789_140--Hb_009152_030 Hb_031866_030 Hb_031866_030 Hb_000789_140--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_000789_140--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_000789_140--Hb_033066_030 Hb_000155_240--Hb_038508_010 Hb_000155_240--Hb_009152_030 Hb_000155_240--Hb_031866_030 Hb_000155_240--Hb_002060_040 Hb_000155_240--Hb_033066_030 Hb_038508_010--Hb_009152_030 Hb_012235_010 Hb_012235_010 Hb_038508_010--Hb_012235_010 Hb_016354_010 Hb_016354_010 Hb_038508_010--Hb_016354_010 Hb_079902_030 Hb_079902_030 Hb_038508_010--Hb_079902_030 Hb_009152_030--Hb_031866_030 Hb_009152_030--Hb_002060_040 Hb_009152_030--Hb_033066_030 Hb_000009_010 Hb_000009_010 Hb_009152_030--Hb_000009_010 Hb_001629_040 Hb_001629_040 Hb_009152_030--Hb_001629_040 Hb_031866_030--Hb_002060_040 Hb_031866_030--Hb_033066_030 Hb_031866_030--Hb_000009_010 Hb_031866_030--Hb_001629_040 Hb_002060_040--Hb_033066_030 Hb_002060_040--Hb_000009_010 Hb_002060_040--Hb_001629_040 Hb_033066_030--Hb_000009_010 Hb_033066_030--Hb_001629_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0277558 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00796941 0.0421457

CAGE analysis