Hb_000009_010

Information

Type -
Description -
Location Contig9: 5879-8186
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12200g
description hypothetical protein
nr
ID XP_012079545.1
description PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
swissprot
ID Q9MAH4
description ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1
trembl
ID A0A067K9Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12249 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_010 0.0 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
2 Hb_001629_040 0.0380896308 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
3 Hb_031866_030 0.1032513521 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
4 Hb_002060_040 0.1141029757 - - putative polyprotein [Oryza sativa Japonica Group]
5 Hb_033066_030 0.1147073665 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
6 Hb_128193_010 0.1169570976 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
7 Hb_009152_030 0.1171038565 - - hypothetical protein L484_026849 [Morus notabilis]
8 Hb_000789_140 0.2163440943 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_017604_030 0.2500090721 - - -
10 Hb_097006_010 0.2505740973 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
11 Hb_000155_240 0.2515166377 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
12 Hb_010164_040 0.2570164554 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_003567_020 0.260707789 - - conserved hypothetical protein [Ricinus communis]
14 Hb_023142_010 0.2670800506 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
15 Hb_006474_010 0.2731947148 - - hypothetical protein VITISV_032357 [Vitis vinifera]
16 Hb_003739_040 0.2758668596 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
17 Hb_009557_010 0.2761596829 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_001878_030 0.2809228653 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
19 Hb_012090_020 0.2832543386 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
20 Hb_000089_050 0.2861462621 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000009_010 Hb_000009_010 Hb_001629_040 Hb_001629_040 Hb_000009_010--Hb_001629_040 Hb_031866_030 Hb_031866_030 Hb_000009_010--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_000009_010--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_000009_010--Hb_033066_030 Hb_128193_010 Hb_128193_010 Hb_000009_010--Hb_128193_010 Hb_009152_030 Hb_009152_030 Hb_000009_010--Hb_009152_030 Hb_001629_040--Hb_128193_010 Hb_001629_040--Hb_031866_030 Hb_001629_040--Hb_009152_030 Hb_001629_040--Hb_002060_040 Hb_001629_040--Hb_033066_030 Hb_031866_030--Hb_002060_040 Hb_031866_030--Hb_033066_030 Hb_031866_030--Hb_009152_030 Hb_000789_140 Hb_000789_140 Hb_031866_030--Hb_000789_140 Hb_002060_040--Hb_033066_030 Hb_002060_040--Hb_009152_030 Hb_002060_040--Hb_000789_140 Hb_033066_030--Hb_009152_030 Hb_033066_030--Hb_000789_140 Hb_009557_010 Hb_009557_010 Hb_128193_010--Hb_009557_010 Hb_023142_010 Hb_023142_010 Hb_128193_010--Hb_023142_010 Hb_128193_010--Hb_031866_030 Hb_128193_010--Hb_009152_030 Hb_009152_030--Hb_000789_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0124056 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0177158 0.046641

CAGE analysis