Hb_171900_010

Information

Type -
Description -
Location Contig171900: 6292-7311
Sequence    

Annotation

kegg
ID rcu:RCOM_1609130
description hypothetical protein
nr
ID XP_002511619.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RD30
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_054343_010 0.0979178349 - - PREDICTED: uncharacterized protein LOC105793279 [Gossypium raimondii]
3 Hb_009557_010 0.1775758765 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_000967_030 0.1908009453 - - -
5 Hb_000159_030 0.1921775282 - - putative glycosyltransferase, partial [Aralia elata]
6 Hb_159957_020 0.1923931288 - - -
7 Hb_019299_050 0.193455017 - - -
8 Hb_138607_010 0.1949290728 - - hypothetical protein RCOM_0725500 [Ricinus communis]
9 Hb_055880_010 0.1967690964 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_009142_030 0.1975174661 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_001514_160 0.1980232092 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
12 Hb_005625_050 0.1981862773 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
13 Hb_014034_010 0.1993155119 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_002890_050 0.1995947167 - - -
15 Hb_001221_120 0.2003210754 - - cytochrome P450, putative [Ricinus communis]
16 Hb_007757_090 0.2004012677 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
17 Hb_006261_010 0.2024203459 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
18 Hb_000946_020 0.2162785167 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
19 Hb_018202_060 0.2271921072 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
20 Hb_169597_010 0.2288281062 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_171900_010 Hb_171900_010 Hb_054343_010 Hb_054343_010 Hb_171900_010--Hb_054343_010 Hb_009557_010 Hb_009557_010 Hb_171900_010--Hb_009557_010 Hb_000967_030 Hb_000967_030 Hb_171900_010--Hb_000967_030 Hb_000159_030 Hb_000159_030 Hb_171900_010--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_171900_010--Hb_159957_020 Hb_019299_050 Hb_019299_050 Hb_171900_010--Hb_019299_050 Hb_054343_010--Hb_009557_010 Hb_138607_010 Hb_138607_010 Hb_054343_010--Hb_138607_010 Hb_023142_010 Hb_023142_010 Hb_054343_010--Hb_023142_010 Hb_128193_010 Hb_128193_010 Hb_054343_010--Hb_128193_010 Hb_054343_010--Hb_000159_030 Hb_009557_010--Hb_128193_010 Hb_009557_010--Hb_023142_010 Hb_001629_040 Hb_001629_040 Hb_009557_010--Hb_001629_040 Hb_000009_010 Hb_000009_010 Hb_009557_010--Hb_000009_010 Hb_000967_030--Hb_000159_030 Hb_000967_030--Hb_159957_020 Hb_000967_030--Hb_019299_050 Hb_055880_010 Hb_055880_010 Hb_000967_030--Hb_055880_010 Hb_009142_030 Hb_009142_030 Hb_000967_030--Hb_009142_030 Hb_001514_160 Hb_001514_160 Hb_000967_030--Hb_001514_160 Hb_000159_030--Hb_159957_020 Hb_000159_030--Hb_055880_010 Hb_000159_030--Hb_009142_030 Hb_000159_030--Hb_001514_160 Hb_014034_010 Hb_014034_010 Hb_000159_030--Hb_014034_010 Hb_159957_020--Hb_055880_010 Hb_159957_020--Hb_009142_030 Hb_159957_020--Hb_001514_160 Hb_159957_020--Hb_014034_010 Hb_005625_050 Hb_005625_050 Hb_019299_050--Hb_005625_050 Hb_007757_090 Hb_007757_090 Hb_019299_050--Hb_007757_090 Hb_006261_010 Hb_006261_010 Hb_019299_050--Hb_006261_010 Hb_019299_050--Hb_000159_030 Hb_019299_050--Hb_159957_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0240136 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.226781 0.088153

CAGE analysis